Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181338g00020 ATGGCTGCAAAAAATCTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTGCTTTAGACATCCTGCCTGAAATACTTGGAGATGACTCTGTCCTCTATGGGAACGATTCTACAAGAGTGTTGCTTGAAAGGTTGGAGAAAAGTCTGTCTGACGTTAAGCCAGTGCTTGACGATGCTGAGCTGAAGCAGTTCGCTGACAAGAGAGTCAAGAAGTGGCTTGTTGATCTCCAAGATGCTCTCTATCTTGCTGATGACTACCTCGATGAACTCTCCACTAAAATTGCCACTGCCCCTCCAAGGGCTCCAGGTATCTCTTCTTACTGTTCTTCTCTTGTTGATTCATATATTGAAGGCAGTGGTGACCTGGAATACATTGTTCGAAGACTAGAGACTGCCGTAAAACGCAAAGATAATCTTCGTCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAGAATTCCATCCACATCTCTCGTTGTAAGTTCTGACATATTTGGTCGGGACAAAGATAAGGAGGAGATAATCAAATTGTTGTTTGATGATACTTGTGATGCTGAATCACCTCTTACTGTGATCCCAATTTGGGGTATGGGCGGAATAGGAAAAACTACTCTGGCTCAACTGGTTTACAATGATGCTGAAGTGGTGGAAAAATTTGATACTATGGCATGGGTGTGTGTTGCTGAAAATTTTGATCCTGTTGGTCTTACAAGGACTATACTGGAGAAAATAACTTCCCTTTCGTGTAACACGAATGATTTTGATTCACTTCAAACTCGTTTGAAAGAAGCGTTGACGGGAAAGACATTCTTAGTTGTTCTAGATGATGTCTGGGAGGATCAAAAAGATATGTGGGAGGATCTTCTAAAGCCTTTTCTTTTCGGGAATCGTGGAAGTAAAATTCTCTTAACAACCCGTGGTGAAAAGGTGGCTTCTGTGGTGGCAACTACTAAACTGCAGTACCCACTGAGTTTATTGTCCGAGGAAGATTGTTGGTTGGTGTTTTTAAAACAAGCAAATCTTTCTTCTGACTCTATCAATCCAACTCTTGAAAAAGTCGGCAAAGATATCGTCAAGAAGTGTGGCGGATTGCCCCTTGCAGTACAAGCCCTGGGAAGGTTATTAGGTGGAAATTCTAATGTCACGTATTGGATTCAGATATTGAAGAGTGAGATTTGGGAATTTTCGCATGACAAGATCAAAGTTGTTCCAGCATTGACAATTAGTTATTATTATCTTCCTTCATGTTTAAAAAGGTGCTTTGTTTATTGTTCCTTGTATCCCAAGGATTATGAGTTTTCTAAAAGTGAGTTGATCTTGTTATGGATGGCGGAGAATTTTTTACAACCAGTAGCAAGAAAGACTCTAGAAGAAGTTGGTGAAGAATATTTTGTAGAATTAATTGCAAGATCATTTTTCCAACCTCATAAAACCGAGGAAAATAAATTTGTGATGCATGATCTCGTGCATGATTTGGCAATGATCTTTGCTGGAGAGTTCTATTTCAGGGCTGAAGAGCCTAAGAATGCTGGTGAGATTGATATCAAAACTCGTCATTTGGCACATATTGCACAAGGCAGTTATCCAATCTCAAAACTTGTTGAAGTTTGTGACAGAATGAAACATACGAGGACATTTCTTGAAATTATTAGGTTGTGGGAATCTTTCCCATTTAACATGGGAAACTCACCTTGTATCTTGTCACAGTTGAAGTGCCTAAGATCTTTATCATTCAAATGCTTTCCTCTTGAGTCACTACCTGATTCATTAGGCGAGTTGATTCATTTGCGATACTTGGATCTCTCTCAGACCAACATTGTGACATTGCCAGAGTCATTGGGTAACTTGTACAATTTGCAGACCATGAAGCTATTTGAATGTTGCGCGTTGAAAATGCTTCCGGCTAGCATGCAAGATCTTGTAAATTTACGCCATCTTGATATTAGAAGGACTTCTTTGCACGAGATGCCGAAAGGCATGAGCAAGTTGCAAAGTTTGCAATTTTTAAGCGACTATGCTGTTGGGAAGCACAAAGGGAACAAGATTAACGAATTGGGAGCACTCGCAAATCTACACGATTCAATTGACATTTCGCATTTGGAGAATGTGGTCAACAGTAGTGAAGCTTTGGAGGCAAGAATGTCTGAAAAAGATGGCATTGATTCTTTGGTGTTGCGTTGGTCTTTGGATGAAGATAACAATATAGTTGATTCCCAAATTGAAAATGGTATATTAGACAAGTTACAACCTCACAGTAAGTTGAAACAGCTGGAAATCAAGAATTGTTGTACGCTTCCATCACTTGGACAGTTGCCCTCTTTGAAGCACCTTAGAATTTCACATTTTTCAAGTGTGGAGACTGTAGGTGATGAGTTTTACCGAAGTGATGAATCTTGTTCGGAGACTCCATTTCCAATGCTTGAAACTCTTTGGTTTGAGTCAATGCCTTGCTGGAAGGAGTGGCGTTGTTCATCGGAGTTCAATGCATTGCCTCGACTCAGGCAGCTTAGCATATGGGAATGCCCGATGTTGAGAGGGGATTTGCCGAATCAACTACCATCTTTGCAATCACTTGTGATTCAGAATTGCGAGCAGCTCAGTTGTTGTTGTGTTCCTCCTTTATTGAGTGATCTATCAATTGAAGGAGAGCATCAAGTGGAGTCCATGGTAGAGGCCATTAAGCACACGCAACTGAGTTGCCTCACGTCCTTGGAGATCTCATATTGTTCCTCCCACTTATCGCTTCCAGTGAGTGCTATTCCCTCATCACTAGAGAAGTTGGAGATATGGTATTGCAGCAAATTAGAATTCCAAATGGATGGCCAACATCACTCGCTGCAGGAACTATTGATAGATAACAGCTGTGATTCAGTTACATCCTTCTCACTTTGTATCTGGGATTGCGGGAGTTTGAAATCCGCGTCGACACTTTGGATGTTAGCACCTCAGTTAAAAGATCTCATATTACTGCATTGCCCAGAGATTGAATTGTCCGCTACAGGGGATCCACACAGTAGCCTGAGATCTCTTTGGATCAGCTACTCCGAGAAACTGGTCAGATCTGCAGCATTCATGAATTCCCAATTTCATGGGCTTGCAAGTCTTACAATTGATGGTTTTAAGATTGACGAGAGTGAGAGTGTGAAGTGCCTCCCAAAGGAAGGTTGGTTGCCTGACTCCCTTGAGTCTCTCGTACTGAATGGTATTGAAAGTATGGAGACGTTGGAATGCAAGGGACTTGCCCACCTCACCTCTCTCCAAGAGTTATATATCCGGGGTTGTCCCAAGTTGGAGAATATGGAGGGAGAAAAGCTGCCTGCCTCTCTAATACGACTCATCATCTTGAGAAGCCCTTTGTTGGGTAAAAAGTGCGAGATGAAGGACCCGCAAGTTTGGCCCAAAATTTCCCACATCCCCAACATTCAAGTTGATGAAACATGGATCTGA 3450 0.4177 MAAKNLYGGAYLSSFVDAALDILPEILGDDSVLYGNDSTRVLLERLEKSLSDVKPVLDDAELKQFADKRVKKWLVDLQDALYLADDYLDELSTKIATAPPRAPGISSYCSSLVDSYIEGSGDLEYIVRRLETAVKRKDNLRLKETAKVDMSWRIPSTSLVVSSDIFGRDKDKEEIIKLLFDDTCDAESPLTVIPIWGMGGIGKTTLAQLVYNDAEVVEKFDTMAWVCVAENFDPVGLTRTILEKITSLSCNTNDFDSLQTRLKEALTGKTFLVVLDDVWEDQKDMWEDLLKPFLFGNRGSKILLTTRGEKVASVVATTKLQYPLSLLSEEDCWLVFLKQANLSSDSINPTLEKVGKDIVKKCGGLPLAVQALGRLLGGNSNVTYWIQILKSEIWEFSHDKIKVVPALTISYYYLPSCLKRCFVYCSLYPKDYEFSKSELILLWMAENFLQPVARKTLEEVGEEYFVELIARSFFQPHKTEENKFVMHDLVHDLAMIFAGEFYFRAEEPKNAGEIDIKTRHLAHIAQGSYPISKLVEVCDRMKHTRTFLEIIRLWESFPFNMGNSPCILSQLKCLRSLSFKCFPLESLPDSLGELIHLRYLDLSQTNIVTLPESLGNLYNLQTMKLFECCALKMLPASMQDLVNLRHLDIRRTSLHEMPKGMSKLQSLQFLSDYAVGKHKGNKINELGALANLHDSIDISHLENVVNSSEALEARMSEKDGIDSLVLRWSLDEDNNIVDSQIENGILDKLQPHSKLKQLEIKNCCTLPSLGQLPSLKHLRISHFSSVETVGDEFYRSDESCSETPFPMLETLWFESMPCWKEWRCSSEFNALPRLRQLSIWECPMLRGDLPNQLPSLQSLVIQNCEQLSCCCVPPLLSDLSIEGEHQVESMVEAIKHTQLSCLTSLEISYCSSHLSLPVSAIPSSLEKLEIWYCSKLEFQMDGQHHSLQELLIDNSCDSVTSFSLCIWDCGSLKSASTLWMLAPQLKDLILLHCPEIELSATGDPHSSLRSLWISYSEKLVRSAAFMNSQFHGLASLTIDGFKIDESESVKCLPKEGWLPDSLESLVLNGIESMETLECKGLAHLTSLQELYIRGCPKLENMEGEKLPASLIRLIILRSPLLGKKCEMKDPQVWPKISHIPNIQVDETWI 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181338g00020 1149 Pfam NB-ARC domain 169 391 IPR002182 GO:0043531
Stsc181338g00020 1149 PANTHER DISEASE RESISTANCE PROTEIN RP 48 842 IPR044974 GO:0006952
Stsc181338g00020 1149 Gene3D - 34 118 - -
Stsc181338g00020 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 425 IPR027417 -
Stsc181338g00020 1149 SUPERFAMILY L domain-like 485 870 - -
Stsc181338g00020 1149 Pfam Rx N-terminal domain 41 98 IPR041118 -
Stsc181338g00020 1149 Gene3D - 326 409 IPR042197 -
Stsc181338g00020 1149 SMART LRR_typ_2 641 664 IPR003591 -
Stsc181338g00020 1149 SMART LRR_typ_2 594 617 IPR003591 -
Stsc181338g00020 1149 FunFam Probable disease resistance protein At1g63360 411 496 - -
Stsc181338g00020 1149 Gene3D - 149 320 IPR027417 -
Stsc181338g00020 1149 FunFam Probable disease resistance protein At1g61300 151 319 - -
Stsc181338g00020 1149 Gene3D Ribonuclease Inhibitor 534 879 IPR032675 -
Stsc181338g00020 1149 Gene3D Ribonuclease Inhibitor 880 1118 IPR032675 -
Stsc181338g00020 1149 PRINTS Disease resistance protein signature 192 207 - -
Stsc181338g00020 1149 PRINTS Disease resistance protein signature 265 279 - -
Stsc181338g00020 1149 PRINTS Disease resistance protein signature 362 376 - -
Stsc181338g00020 1149 PRINTS Disease resistance protein signature 851 867 - -
Stsc181338g00020 1149 Gene3D - 410 495 IPR036388 -
Stsc181338g00020 1149 SUPERFAMILY L domain-like 897 1141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181338g00020 Stsc-Chr181338 90348 93975 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181338g00020 177 494 WRKY Transcription Factor Family AT5G45050 24.852 6.96e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181338g00020 - - aip:107626318 1425.99