Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181338g00018 ATGGCTGCAAAAAATCTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGAAGCTATTTTAGACAACCTGTCTAAAATACTTGAAGATGACTCTGTCCTCTATGGAATCCACTCTGCCAAGAAGTTCCTTCCAAGGTTGGAGGAATGTCTGATTGAAGTTGCTCCTGTGCTTGATGATGCTGAGCTGAAGCAGTTCACTGACAAGAAAGTCAAGAGGTGGCTTGTTGATCTCCAAGATGCTCTCTATCTTGCTGATGACTTGCTCGATGAACTCTCCACCAAAGCCGCCATCGATGCCACTCAAAAGGCTCCAGGTAACTCCTCTTCCTGGTCTCGTCCTGTTGATTCAATCTTGGAAGATAGTGGTGAAATGGAATACATAGTTGGAAAACTAGAGTCTCTTGTAGGACGTAAAACTCTTCTTCGTCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAGAACTCCATCCACATCTCTCGTTGTAAGTTCTGACATAGTTGGTCGGGACAAAGACAAGGAGAAGATAATCAAATTGTTGTTTGATGATACTTGTGATGCTGAATCACCTGTTACTGTGATCCCCATTTGGGGTATGGGCGGAATAGGAAAAACTACTCTGGCTCAACTAGTTTACCGTGATGCTGAACTGGTGGAAAAATTTGATTCTAGGACATGGGTGTGTGTTGCTGAAAATTTTGATCCTGTTGGTCTTACAAGGACTATACTGGAGAAAATAGCTTCCATTTCGTGTGACAGGGATGATTTTGATTCACTTCAAACTCATTTGAAAGAAGCGTTGACAGGAAAGACATTCTTAGTTGTTCTAGATGATGTCTGGGAGGATCAAAAAGATATGTGGGACGATCTTCTAAAACCTTTTCGTCATGGGAGTTGTGGAAGTAAAATTCTCTTAACAACCCGTGGTGAAAATGTGGCTTCTGTGGTGGCAACTACTAAACTGCAGTACCAACTGAGCTTATTGTCCGAGGAAGATTGTTGGTTGGTGTTTTTAAAACGAGCACAACTTTCTGCTGACTCTATGAATCCAACTCTTGAAAAAGTAGGCAAAGATATCGTCAAGAAGTGTGGCGGATTGCCCTTGGCAGTACAAGCCTTGGGAGGCTTATTACGTGGAAATTCTAATGTCACGCATTGGAATCAGATATTGAAGAGTGAGATTTGGGAATTTTCGCATGACAAGATCAAAGTTGTTCCAGCATTGACAATTAGTTATTACTATCTGCCTTCATGTTTAAAAAAGTGCTTTGTTTATTGTTCTTTGTATCCCAAGGATTATGAGTTTTCTTAA 1311 0.4142 MAAKNLYGGAYLSSFVEAILDNLSKILEDDSVLYGIHSAKKFLPRLEECLIEVAPVLDDAELKQFTDKKVKRWLVDLQDALYLADDLLDELSTKAAIDATQKAPGNSSSWSRPVDSILEDSGEMEYIVGKLESLVGRKTLLRLKETAKVDMSWRTPSTSLVVSSDIVGRDKDKEKIIKLLFDDTCDAESPVTVIPIWGMGGIGKTTLAQLVYRDAELVEKFDSRTWVCVAENFDPVGLTRTILEKIASISCDRDDFDSLQTHLKEALTGKTFLVVLDDVWEDQKDMWDDLLKPFRHGSCGSKILLTTRGENVASVVATTKLQYQLSLLSEEDCWLVFLKRAQLSADSMNPTLEKVGKDIVKKCGGLPLAVQALGGLLRGNSNVTHWNQILKSEIWEFSHDKIKVVPALTISYYYLPSCLKKCFVYCSLYPKDYEFS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181338g00018 436 PANTHER DISEASE RESISTANCE PROTEIN RP 59 436 IPR044974 GO:0006952
Stsc181338g00018 436 FunFam Probable disease resistance protein At1g61300 151 320 - -
Stsc181338g00018 436 Pfam NB-ARC domain 170 393 IPR002182 GO:0043531
Stsc181338g00018 436 Gene3D - 327 415 IPR042197 -
Stsc181338g00018 436 Gene3D - 16 127 - -
Stsc181338g00018 436 Gene3D - 152 322 IPR027417 -
Stsc181338g00018 436 Pfam Rx N-terminal domain 15 97 IPR041118 -
Stsc181338g00018 436 PRINTS Disease resistance protein signature 266 280 - -
Stsc181338g00018 436 PRINTS Disease resistance protein signature 363 377 - -
Stsc181338g00018 436 PRINTS Disease resistance protein signature 193 208 - -
Stsc181338g00018 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181338g00018 Stsc-Chr181338 82651 83961 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181338g00018 191 379 WRKY Transcription Factor Family AT5G45050 26.425 2.02e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181338g00018 - - ahf:112729759 567