Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181338g00010 ATGGCTGAAAATCTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGAAGCTATTTTAGACAACCTGTCTAAAATACTTGAAGATGACTCTGTCCTGTATGGAAACCACTCTGCCAAGAAGTTCCTTCCAAGGTTCGAGGAATGTCTCATTGAAGTTGCTCCAGTGCTTGATGATGCTGAGCTGAAGCAGTTCACTGACAAGAAAGTCAAGAGGTGGCTTGTTGATCTCCAAGATGCTCTCTATCTTGCTGATGACTACCTCGATGAACTCTCCACCAAAGCCGCCATCGATGCCACTCAAAAGGCTCCAGGTAACTCTTCTTTCTGGTCTCGTCCTGTTGATTCAATCTTGGAAGATAGTGGTGACCTGGAATACATAGTTGGAAGACTAGAGTCTCTTGTACGACGCAAAACTCTTCTTCGGCTGAAGGAGACTGCCAAGGTGGACATGTCATGGAGAATTCCATCCACATCTCTCGTTGTAAGTTCTGACATATTTGGTCGGGACAAAGACAAGGAGGAGATAATCAAATTGTTGTTCGATGATACTTGTGATGCTGAATCACCTCTTACTGTGATCCCAGTTTGGGGTATGGGTGGAATAGGAAAAACTACTCTGGCTCAATTGGTTTACAGTGATGCTAAAGTGGTGGAAAAATTTGATACTATGGCATGGGTGTGTGTTGCTGAAAATTTTGATCCTGTTGGTCTTACGAGGACTATACTGGAGAAAATAGCTTCTGTTTCGTGTGACAGGGATGATTTTGATTCACTTCAAACCCGTTTGAAAGAAATGTTGAGAGGAAAGACATTCTTAGTTGTTCTAGATGACGTTTGGGAAGATCAAAAAGATATGTGGGAGGATCTTCTGAAACCTTTTCATTACGGGAATCATGGAAGTAAAATTCTTCTAACAACCCGTAGTGAAAAGGTGGCTTCTGTGGTGGCAACTGCAAAACTACAATACCAACTGAGTTTATTGTCCAAGGAAGATTGTTGGTCGGTGTTTTTAAAACAAGCACATCTTTCTGCTGACTCTATCAATCCAACTCTTGAAAAAGTCGGCAAAGATATCGCCAAGAAGTGTGGCGGATTGCCCTTGGCTGTACAAGCCATGGGAGGCTTATTACGTGGAAATTCTAATGTCACAGATTGGAATAAGATATTGAAGAGTGAGATTTGGGAGTTTCCCCATGACAGGATAAAAGTTGTTCCGGCGTTAACAATCAGTTATTATTATCTACCTTCATGTTTAAAAAAATGCTTTGTTTATTGTTCCTTGTATCCCAAGGATTATGTGCTTTCTAAAAGTGAGTTAATCTTGTTATGGATGGCTGAGAATTTTTTACAACCAGTAGCAAGAAAGACTCTAGAAGAAGTTGGTGAAGAATATTTTGAAGAATTAATTGCAAGATCACTTTTACAACCTCACAGCACTTGTGAAAATAAATTTGTGATGCATGATCTCATGCATGATTTGGCAATGATCTTTGCTGGAGAGTTCTATTTCAGGGATGAAGAGCCTAAGAATGATGTTGAGTTTGATATCAAAACTCGTCATTTGTCACATATTGCACATGGCAATTATCCAATCAAACTTTTGGAAAAAGTTTGTGACAGAATGAAACGTACAAGGACATTTCTTGAAATTAATTCGGGGGCTCATTTCCCATTTAACATGGGAAACTTACCTTGTATCTGGTCACAATTGAAGTACCTAAGATCTTTATCGTTCAGATGCTTTCCTCTTGAGTCACTACCAGATTCAATAGGCGAGTTGAATCATTTGCGTTACTTGGATCTCTCTAAGACCAACATTGTGACATTGCCCGAGTCATTGGGTAACTTGTACAATTTGCAGACCTTGAAGCTATATTATTGTCGAAGGTTGAAAATGCTTCCGATTGGCTTGCAAGATCTTGTCAATTTACGCCATCTTGATATTAGATTGACTGATTTGCATGAGATGCCAAAAGGCATGAGCAAGTTGCAAAGTTTGCAATTCTTAAGCAATTATGTTGTTGGGAAGCATGAAAAGAACAAGATTAACGAATTGGGAGCACTTGCAAATCTACACGATGCAATTGAGATTTCCCATTTGGATAATGTGGTCAACAGTAGTGAAGCTTCAGAGGCAAGAATGTCTGAGAAAGATGGCATTGATTCTTTGGCGTTGGATTGGTCTTCGGATGAAGATAAGAATATTGTTGATTCGCAAATCGAAAATGATATACTAGACAAGTTACGACCACACAGTAATTTGAAAGAACTAGAAATCATGGGTTACAGGGGTACAAGATTTCCAGAATGGTTGGGAAATTCTTCCTACCACAACATCACCGAAGTATCACTCCATGATTGCAGGAATTGTCGTACGCTTCCATCGCTTGGACAGTTGCCCTCTTTGAAGCACCTTACAATTTCAGATTTTAAAAGTGTGGAGACTGTAGGTGTTGAGTTTCACCGAAGTGATGAATCTTGTTTGGAGACTCCATTTCCAATGCTTGATACTCTTTCGTTTTACTCCATGCCTTACTGGAAGGAGTGGCGTTGTTCATTGGAGTTCAATGCATTGCCTCGACTCAGGGTGCTTACCATAAGGGATTGTCCGATGTTGAGAGGAGATTTGCCGAATCAACTACCATCTTTGCAATCACTTGACATTAATAATTGCGAGCAGCTCAGTTGTTGTTGTCTTCCTCCTTCATTGAGAGTTCTATCAATTGAAGGAGAGCATCAAGTGGAGTCCATGGTAGAGGCCATTAAGCACACGGAACTGACTTGCCTCACGTGCTTATACATCACATATTGCTCCTCCCACTTATCGCTTCCAGTGAGTGCTATTCCCGCATCACTAGAGAAGTTGAACATATGGAGTTGCAGCAAATTAGAATTCCAAATGGATGGCCAACATCACTCGCTACAGAAATTATCAATAATCAACAGCTGTGATTCAGTTACATCCATCTCGTTGGATTCCTTTCCAAAACTCGTGCATGTTTCCATCTGGAGATGTGAAAAGATGGAGACTGTTGTGGTGTCACGCTCTCTTTCATGTCTCCGGACTTTACGTATCCAGGATTGTGGGAGTTTGAAATCAGCGTCGACACTATGGATGTTAGCACCTCAGTTAAAAGATCTCATATTACTGCGTTGCCCAGAGATTGAATTGTCCGCTTGCGGGGATCCACACAGTAGCCTGAGAAGTCTTGAAATCAGCTGCTACAAGAAACTGGTCAGCTCTGCAGCATTCATGAATTCCCAATTTCATGGGCTTTCTCATCTTGCCATTCATGGTGATGAGATTCACCAGAGTGAGTGTGTGAAGTGCCTCCCAAAGGAAGGTTGGTTGCCTGCCTCCCTTGAGAAACTGGAACTGAAATACATTGAAAGTGTGGAGACATTGGAATGCAAGGGACTTGCCCACCTCACCTCCCTCAAAGAATTAACTATTGTGAGATGTCCAAAGTTGGAGAATATCGAGGGAGAAAAGCTGCCTGCCTCTCTATTACTACTCACCATCTACAGTAGCCCTTTGTTGGGTAAACAGTGCAAGATGAAGGACCCAAAGGATTGTTACTGGCATGGGAAGCTGGATATAAAGAGGATTTGGAAAGGATTGTTACTGGCATGGGAAGCTGGATATAAAGAGGTTTACTGCGAGACTGATTGCCATGAGGCGTATGTTTTATTGAAGGATTTCAATATTCCTTCTTGTAGTGAAGAGAGTGCGCTAGTCTTGAAGACCCAACAAATCTTACTCAGACCTTGGAGAGTAGAGGTTGCACTGATTCAGAGGAATGCAAATCGTGTAGCAGATGCTATGGCCAAACATGCGATCATTCATGGGGTTCATTATGCGGAATGGTTGTTGCCTTGGGAGGACCTTCGATGTGCTATCAACCTAGATATCAATCTTAGCTAG 3924 0.4151 MAENLYGGAYLSSFVEAILDNLSKILEDDSVLYGNHSAKKFLPRFEECLIEVAPVLDDAELKQFTDKKVKRWLVDLQDALYLADDYLDELSTKAAIDATQKAPGNSSFWSRPVDSILEDSGDLEYIVGRLESLVRRKTLLRLKETAKVDMSWRIPSTSLVVSSDIFGRDKDKEEIIKLLFDDTCDAESPLTVIPVWGMGGIGKTTLAQLVYSDAKVVEKFDTMAWVCVAENFDPVGLTRTILEKIASVSCDRDDFDSLQTRLKEMLRGKTFLVVLDDVWEDQKDMWEDLLKPFHYGNHGSKILLTTRSEKVASVVATAKLQYQLSLLSKEDCWSVFLKQAHLSADSINPTLEKVGKDIAKKCGGLPLAVQAMGGLLRGNSNVTDWNKILKSEIWEFPHDRIKVVPALTISYYYLPSCLKKCFVYCSLYPKDYVLSKSELILLWMAENFLQPVARKTLEEVGEEYFEELIARSLLQPHSTCENKFVMHDLMHDLAMIFAGEFYFRDEEPKNDVEFDIKTRHLSHIAHGNYPIKLLEKVCDRMKRTRTFLEINSGAHFPFNMGNLPCIWSQLKYLRSLSFRCFPLESLPDSIGELNHLRYLDLSKTNIVTLPESLGNLYNLQTLKLYYCRRLKMLPIGLQDLVNLRHLDIRLTDLHEMPKGMSKLQSLQFLSNYVVGKHEKNKINELGALANLHDAIEISHLDNVVNSSEASEARMSEKDGIDSLALDWSSDEDKNIVDSQIENDILDKLRPHSNLKELEIMGYRGTRFPEWLGNSSYHNITEVSLHDCRNCRTLPSLGQLPSLKHLTISDFKSVETVGVEFHRSDESCLETPFPMLDTLSFYSMPYWKEWRCSLEFNALPRLRVLTIRDCPMLRGDLPNQLPSLQSLDINNCEQLSCCCLPPSLRVLSIEGEHQVESMVEAIKHTELTCLTCLYITYCSSHLSLPVSAIPASLEKLNIWSCSKLEFQMDGQHHSLQKLSIINSCDSVTSISLDSFPKLVHVSIWRCEKMETVVVSRSLSCLRTLRIQDCGSLKSASTLWMLAPQLKDLILLRCPEIELSACGDPHSSLRSLEISCYKKLVSSAAFMNSQFHGLSHLAIHGDEIHQSECVKCLPKEGWLPASLEKLELKYIESVETLECKGLAHLTSLKELTIVRCPKLENIEGEKLPASLLLLTIYSSPLLGKQCKMKDPKDCYWHGKLDIKRIWKGLLLAWEAGYKEVYCETDCHEAYVLLKDFNIPSCSEESALVLKTQQILLRPWRVEVALIQRNANRVADAMAKHAIIHGVHYAEWLLPWEDLRCAINLDINLS 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181338g00010 1307 Gene3D - 326 409 IPR042197 -
Stsc181338g00010 1307 Pfam Rx N-terminal domain 14 96 IPR041118 -
Stsc181338g00010 1307 FunFam Probable disease resistance protein At1g61300 151 319 - -
Stsc181338g00010 1307 Pfam Reverse transcriptase-like 1203 1279 IPR002156 GO:0003676|GO:0004523
Stsc181338g00010 1307 Gene3D - 149 320 IPR027417 -
Stsc181338g00010 1307 PANTHER DISEASE RESISTANCE PROTEIN RP 72 869 IPR044974 GO:0006952
Stsc181338g00010 1307 SUPERFAMILY L domain-like 538 963 - -
Stsc181338g00010 1307 Gene3D Ribonuclease Inhibitor 1060 1178 IPR032675 -
Stsc181338g00010 1307 Gene3D Ribonuclease Inhibitor 536 716 IPR032675 -
Stsc181338g00010 1307 Gene3D Ribonuclease Inhibitor 721 877 IPR032675 -
Stsc181338g00010 1307 Gene3D Ribonuclease Inhibitor 968 1059 IPR032675 -
Stsc181338g00010 1307 Gene3D Ribonuclease Inhibitor 878 967 IPR032675 -
Stsc181338g00010 1307 Gene3D - 15 118 - -
Stsc181338g00010 1307 SUPERFAMILY L domain-like 838 1184 - -
Stsc181338g00010 1307 FunFam Probable disease resistance protein At1g63360 411 496 - -
Stsc181338g00010 1307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 425 IPR027417 -
Stsc181338g00010 1307 PRINTS Disease resistance protein signature 878 894 - -
Stsc181338g00010 1307 PRINTS Disease resistance protein signature 362 376 - -
Stsc181338g00010 1307 PRINTS Disease resistance protein signature 192 207 - -
Stsc181338g00010 1307 PRINTS Disease resistance protein signature 265 279 - -
Stsc181338g00010 1307 CDD RNase_H_like 1203 1277 IPR044730 -
Stsc181338g00010 1307 Gene3D - 410 495 IPR036388 -
Stsc181338g00010 1307 Pfam NB-ARC domain 169 390 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181338g00010 Stsc-Chr181338 42217 46634 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181338g00010 177 816 WRKY Transcription Factor Family AT5G45050 22.238 1.05e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181338g00010 - - aip:107626318 1498.03