Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc181337g00018 | ATGGCGGCGGCGACGGTGGTTCCGGCGACGGCGTCGCTCTACGTAGGAGACCTACACCCTGATGTGTTGGACAGCGAGCTGTTCGAGGCGTTCTCGGAGTTCAAGAGCATCGCCTCCGTTCGAATCTGCAAAGACGCTTCCACAGGGAGGTCACTCTGTTACGGTTACGTCAACTTCATTTCTCACCAAGACGCAAGTCGTGCAATTGAGTTGAAGAATCATTCTTTACTACATGGAAAAGTGATAAGGGTCATGTGGTCTCGTCGAGATCCTGATGTGAGAAAAAGTGGCAGAGGGAATGTTTTTGTTAAGAACTTAGCTGAATCTATAGATAATGCTGGATTACATGATTTATTTCAAAAGTATGGAAATATCTTGTCCAGCAAAGTTGTCATGTCGGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATCGAGAAGTTGAATGGCATTACTGTTAAAGATAAGCAGATGTATGTCGGGAATTTTATGAAAAAGAGTGAACGCATATTGCCTGATCCTGAGGCCAAATATACAAATTTGTACATCAAGAATTTGGACCCGGATATTACAGATGAACTCCTTCAGGAGAAGTTTTCCTCCTTTGGGAAAATTGTGAGCCTGGCTATAGCAAAAGATGCCAATGGGATGTCAAAGGGTTTTGCATTTGTGAACTATGATACCCCAGATGAAGCTAAACAGGCGATGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAATCTATATGTAGGAAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATCATCTGTTCGAAGAAAAGCGTAAGGAACAAATCATGAAATACAAGAGGAAAGAGGATAGGCAAACACAGTTGCAGCTCCAGTTTTCTCAGCAATTAGCAGCGCTAGGTGCACCTTCGAATGCAGTTATTCCTGGGGGATATCATCGTTTCTACTATACTGGTGGCGTTGTTTCACACGTGCCTTCTCAACCTGGACTGATGTATCAACATCTTGGATTGAGGTCAGGATGGAGGCCTAATGCTTTTGCACCTCCCACTAGACCATTTCAGCAGTCTGCAGCTCCTAACGTTTCAAACAATACTAGGCAGCATAGGCAAAACAAAGGCAGGATGAATGGACACACAAATTCACAGGGAAAACCATACACTTCTCAGTCAGCAGCCTCTTCCAAGCAGGCTATTTTTTTTCTCGGTGGACACCGGCATGTGATGGAAAAAGGATCTGGAATTTCATCCTCTGGAGGGTCTCAGGGATCAGAAATGCTGCATAGTATGCTTGCTACTGCCATCCCGGAGCAACAGAAACAGATACTTGGCGAGCGTCTTTACCCACTTATCAAGAAACTCAAGCCTACCTTAGCAGCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGCAGAATTGCTGCTCCTCCTGGAATCACCGGAATCACTTTCTGCCAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAACACCAAGGTTTCTGGCAAGGAAGCATTTCATCCGAACTTGCTCTCGCCCGAAGTTGCCGTTAACTGA | 1590 | 0.4516 | MAAATVVPATASLYVGDLHPDVLDSELFEAFSEFKSIASVRICKDASTGRSLCYGYVNFISHQDASRAIELKNHSLLHGKVIRVMWSRRDPDVRKSGRGNVFVKNLAESIDNAGLHDLFQKYGNILSSKVVMSEDGKSKGYGFVQFESEESANAAIEKLNGITVKDKQMYVGNFMKKSERILPDPEAKYTNLYIKNLDPDITDELLQEKFSSFGKIVSLAIAKDANGMSKGFAFVNYDTPDEAKQAMEAMNGSQFGSKNLYVGRAQKKAEREQILHHLFEEKRKEQIMKYKRKEDRQTQLQLQFSQQLAALGAPSNAVIPGGYHRFYYTGGVVSHVPSQPGLMYQHLGLRSGWRPNAFAPPTRPFQQSAAPNVSNNTRQHRQNKGRMNGHTNSQGKPYTSQSAASSKQAIFFLGGHRHVMEKGSGISSSGGSQGSEMLHSMLATAIPEQQKQILGERLYPLIKKLKPTLAAKITGMLLEMDNAELLLLLESPESLSAKVEEAVQVLKNTKVSGKEAFHPNLLSPEVAVN | 529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc181337g00018 | 529 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 190 | 267 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 101 | 169 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 13 | 83 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 192 | 260 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | Gene3D | - | 432 | 511 | - | - | |
| Stsc181337g00018 | 529 | SUPERFAMILY | PABC (PABP) domain | 438 | 510 | IPR036053 | GO:0003723 | |
| Stsc181337g00018 | 529 | SMART | poly_2 | 446 | 509 | IPR002004 | GO:0003723 | |
| Stsc181337g00018 | 529 | FunFam | Polyadenylate-binding protein | 96 | 180 | - | - | |
| Stsc181337g00018 | 529 | FunFam | Polyadenylate-binding protein | 432 | 517 | - | - | |
| Stsc181337g00018 | 529 | FunFam | Polyadenylate-binding protein | 181 | 275 | - | - | |
| Stsc181337g00018 | 529 | Gene3D | - | 179 | 285 | IPR012677 | - | |
| Stsc181337g00018 | 529 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 11 | 89 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | Gene3D | - | 3 | 99 | IPR012677 | - | |
| Stsc181337g00018 | 529 | SMART | rrm1_1 | 12 | 85 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | SMART | rrm1_1 | 100 | 172 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | SMART | rrm1_1 | 191 | 263 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | CDD | RRM2_I_PABPs | 97 | 173 | IPR045305 | - | |
| Stsc181337g00018 | 529 | SUPERFAMILY | RNA-binding domain, RBD | 182 | 273 | IPR035979 | GO:0003676 | |
| Stsc181337g00018 | 529 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 434 | 511 | IPR002004 | GO:0003723 | |
| Stsc181337g00018 | 529 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 99 | 176 | IPR000504 | GO:0003723 | |
| Stsc181337g00018 | 529 | MobiDBLite | consensus disorder prediction | 363 | 400 | - | - | |
| Stsc181337g00018 | 529 | SMART | rrm2_1 | 12 | 85 | IPR003954 | GO:0003676 | |
| Stsc181337g00018 | 529 | SMART | rrm2_1 | 191 | 263 | IPR003954 | GO:0003676 | |
| Stsc181337g00018 | 529 | SMART | rrm2_1 | 100 | 172 | IPR003954 | GO:0003676 | |
| Stsc181337g00018 | 529 | SUPERFAMILY | RNA-binding domain, RBD | 11 | 178 | IPR035979 | GO:0003676 | |
| Stsc181337g00018 | 529 | Gene3D | - | 100 | 178 | IPR012677 | - | |
| Stsc181337g00018 | 529 | Pfam | Poly-adenylate binding protein, unique domain | 442 | 506 | IPR002004 | GO:0003723 | |
| Stsc181337g00018 | 529 | PANTHER | RNA BINDING PROTEIN | 11 | 70 | - | - | |
| Stsc181337g00018 | 529 | FunFam | Polyadenylate-binding protein | 3 | 95 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc181337g00018 | Stsc-Chr181337 | 91189 | 95135 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc181337g00018 | 12 | 512 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 32.827 | 4.70e-64 | 218 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc181337g00018 | K13126 | - | qsa:O6P43_010206 | 459.914 |