Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181337g00016 ATGTCTGAACCCGCCGCCACCGACGATGCAGCATCCACGGCATCCTCTCCGCCACCGCCACCGCCACCAGCCCAACACAAGAGCTGGGCGGATGAAGCCGACGACGATGCTGCAGCCACTGATGAATCCACCACCGCCACAAAGGAGCCATCTACCTCATCGCCGTCGCTCAACGTCGACGAATTAACGATCGACGAAAACAAAACACCTCTGAAGCTTCTAGACGATCCAGAAGACTCCAATATCCAAGCGGTTACCTCCGGAGACACGCCGTACACCTCGGCGGCGACGTTCGAGGACCTGAACTTGTCGGCGGAGCTTTTGAAAGGACTCTACGTGGAGATGAAGTTCCAGAAACCGAGCAAGATCCAAGCCATAAGCTTGCCGATGATACTCAACCCGCCGCACCGTGATTTGATCGCTCAGGCTCACAACGGTTCCGGCAAGACCACATGCTTTGTTTTAGGGATGCTTAGTCGTGTGGATCCTTCGATGCAAGCTCCTCAAGCTCTCTGCATTTGTCCAACGAGGGAGCTTGCTATTCAGAACACTGAAGTTCTTAGGAAGATGGGGAAGTACACAGGGATTAGCTCGGAGTGTGCTGTTCCGACGGATAGCAGGGATTCGCTTCCAATTCAAAAAAGGGCCCCAATTATGGCTCAGGTGGTTATTGGGACTCCTGGCACCATAAAGAAGTGGATTTCTTACAAGAAATTGGCTGTGACCAGATTGAAGATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAAGAAATAGAAAAATTCAATTCTAGCTGCCAGGTTCTTCTGTTTTCTGCTACATTCAATGAGACTGTCAAGAACTTTGTTGAGAGGACAGTTAAAAGGGATCATAATAAACTTTTTGTTAAGAAAGAAGAGCTTTCTTTAGATGCTGTGAAGCAATATAAAGTGCGTTGCCCTGATGAGCTGTCAAAAATTGAAGTGATTAAAGACTACATTTTTGAATTAGGAGAAAATGTGGGTCAAACGATTATTTTCGTGCGCACAAGACAGAGTGCAAAAATGCTGCACAAGTCACTTGTTGATATGGGTTATGAAGTTACTTCCATACAAGGTGCACTTGACCATGAAGCGAGAGACAAAATTGTCAAAGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCAACAGATGTTCTTGCTCGAGGCTTTGATCAGCAACAGGTCAATTTGGTTATCAACTATGATCTCCCAATAAAACATACTGCCGAGTATACACGCGAATTTGAACCTGATTATGAGGTGTACTTGCACAGAGTTGGTAGGGCTGGACGTTTTGGCCGCAAGGGGGCTGTGTTTAACCTGATATGTGATGAAAGGGATGAAAGGCTGATGTCAAAGATTGAGAACCATTTTGGCACCCGTGTATCAGAGGTACGCGAAAAAAGTGTTGAAGATTATAAAGCTGCTCTTAAGGAGGCCGGGTTACTCCAATGA 1518 0.4611 MSEPAATDDAASTASSPPPPPPPAQHKSWADEADDDAAATDESTTATKEPSTSSPSLNVDELTIDENKTPLKLLDDPEDSNIQAVTSGDTPYTSAATFEDLNLSAELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPSMQAPQALCICPTRELAIQNTEVLRKMGKYTGISSECAVPTDSRDSLPIQKRAPIMAQVVIGTPGTIKKWISYKKLAVTRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSSCQVLLFSATFNETVKNFVERTVKRDHNKLFVKKEELSLDAVKQYKVRCPDELSKIEVIKDYIFELGENVGQTIIFVRTRQSAKMLHKSLVDMGYEVTSIQGALDHEARDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPIKHTAEYTREFEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDERLMSKIENHFGTRVSEVREKSVEDYKAALKEAGLLQ 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181337g00016 505 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 50 473 - -
Stsc181337g00016 505 Pfam DEAD/DEAH box helicase 122 294 IPR011545 GO:0003676|GO:0005524
Stsc181337g00016 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 495 IPR001650 -
Stsc181337g00016 505 Pfam Helicase conserved C-terminal domain 332 454 IPR001650 -
Stsc181337g00016 505 SMART ultradead3 116 322 IPR014001 -
Stsc181337g00016 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 125 IPR014014 GO:0003724
Stsc181337g00016 505 SMART helicmild6 361 454 IPR001650 -
Stsc181337g00016 505 MobiDBLite consensus disorder prediction 43 60 - -
Stsc181337g00016 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 472 IPR027417 -
Stsc181337g00016 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 306 IPR014001 -
Stsc181337g00016 505 Gene3D - 75 313 IPR027417 -
Stsc181337g00016 505 MobiDBLite consensus disorder prediction 1 60 - -
Stsc181337g00016 505 CDD DEADc_DDX19_DDX25 103 307 - -
Stsc181337g00016 505 CDD SF2_C_DEAD 319 463 - -
Stsc181337g00016 505 Gene3D - 316 498 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181337g00016 Stsc-Chr181337 77945 81298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181337g00016 97 486 Eukaryotic Initiation Factors Gene Family AT1G72730 37.468 3.00e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181337g00016 K18655 - qsa:O6P43_010208 747.658