Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181337g00005 ATGGAGGAATCACCATCTCCCAAGCCAGAGCTCGAATCCACAACCACAACTCTAACATGCCGCGATTCCGAGCTCAGCAACAGCAACAGCAGCTTCTGCAGCAGCGAGTTCATGCTTCCAAACAAGAACAACAACAACGATAGAGGTGAGGTTATTGTGAACGGTTACATTGTGTACTCGCGAAGGAAAACGAAGAATCTCCATGAAGAAGAGGAAGAGAAGAAGGCAATTGTGAAGGTGGAGGAGGAGAGTAGTGAGGTGGTGGTGATCCAGAACGACGTCGTTTTGGGAAGGTTGAAGAGGAATAGGAAGCCGACGTGGAAAACGGTGGTGGATGAGTGTGAAGTTGGAGAAGAAGAGAAAGCGGTGGTTTTCAAGATGAAGTCAGCGGAGAAGAAGGTCGTCGTCGTTAACCGAAGACCGGTCACCGTTAAAGAGCTCTTCGACACCGGCTTGCTCGACGGCGTTCCCGTTTTTTACATCGGTTGTAAGAAGGATTCAACTTCCGGATTACGGGGTGTAATTCAAGATGGGGGAATATTGTGCTCATGCTGTATTTGCAATGGACGCAGGATTATTCCACCCTCCCAATTCGAGATTCATGCTTGCAATACATACAAGAGAGCAGCACAGTATATTTGCCTTGAGAATGGGAAGAGCTTGCTTGACCTTTTGAGAGCATGCAGAGCAGTTCCCCTGCATGGTTTGGAGGTGGCAGTTCAAAATTTTCTTTGTTCCCCACCTGAAGAAAAATACTTTACCTGCAAAAGTTGCAGAGGGTGTTTTCCTTCTTCAAGTGTGGAAAGAGTGGGGCTTATATGCCAATCTTGTGTTGAGGAAAGGAAATCTGAAAACAATTCTATTAAAAGAGTTGGCAAAAGAGTCAGGTCTCCTAGGCCAGCATTGTTTCCCAGTCCATCAAGCACTTCTGAACTTTGTAATTCTTCACAAACTAAGAGACGCTGGAAGAAAAGAGCAAAGTCATCTAAACGGAATGGCAGCTGCTCAGCTTTTTCCAAGAGTGCTTCAGATCCTATCCTATTCCAGAAGAGTCTGTGGAAGAGGAAAACAAAGTCATATAAACTGACAGTAAAATTGAACACTGCTCCAGTTACTTCAACTTCGCTGTGTCCAGCTACTTCAACTTCAACGTGTTTATCTCCAGAAACTAAGAGCCAGTGGAAGATTGCGAAAAAGTATCAGCGACTACATAAATTAATTTTTGAAGAAAATGGATTACTTGATGGAGCCAAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGTAGGTATCAAAAGGGGCTCTGGAATTGTGTGTGGATGCTGTAACACACTGGTCAGCCCCTCACAATTTGAGGTACATGCAGGTTGGGCATCTCGCAGGAAACCTTATACATACATCTACACTTCAGACGGGATGTCTCTCCACGAGTTAGCAATGTTTATACTAAAAGAACGCAAATACACTGCAAAGTATAATGATGATCTATGCGTTGTCTGTTGGAATGGTGGAAACCTGCTGCTCTGTGATGGATGCCCAAGGTCGTTTCACAAAGAATGTGCATCAGTATCAAGCATTCCTCGTGGTAATTGGTATTGTCAAATTTGCCGAAACATGTTCCAGAGAGAAAGCTTTGTTGCAGACAATGTCAATGCTGTGGCAGCAGAAAGGGTGGAAGGAGTTGGTCCTACTGAACAGATTGCCAGATGCATTCGCATAGTAAAAGATACTGACGCTGAGATGGGTGGATGTGTTTTGTGCGGATGTTCAGACTTCAGCAGATCAGGATTTGGTCCACGCACAATAATATTCTGTGATCAGTGTGAAAAGGAATACCATGTTGGTTGTTTGAGGGATCATAAGATGGCATTTTTGAAGGAGTTGCCTGAAGGGATTTGGATTTGTTGCGATGATTGCACGAGGATACATTCTATTTTGGAGAACATCCTGGTTCGGGTGCCTGAGAGACTTCCTGAATCTCTCTTGGATGTAATAAAGATGAAGCAAGAGGAAATATTTTTAGGACTACCTAATGAGATTGATGTAAGATGGAGACTTCTTAATGGGAAAATTGCTAGCCCTGAAACTAGGCCATTCCTTTTGCAGGCTGTGTCAATGTTTCACGAATGTTTTGATCCTATTATTGATCCAGTTAGTGGAAGTGACCTTATTCCTGCCATGGTTTATGGAAGAAGTGTGCAGACTCAGGATTTTGGTGGATTTTATTGTGCATTATTAATGGTCAATTCATGTGTGGTATCTGCGGCTATGCTTCGAGTTTTTGGAAGAGATGTTGCAGAGCTTCCTTTAGTTGCAACGTGTTATAAGAACCGTGGAAAGGGTTACTTCCAAACGCTGTTCTCTTGCATTGAGAGGCTACTGGCTTTCTTGAATGTGAAGAACTTTGTTCTACCAGCTGCTGAGGAAGCAATATCTATATGGACCGATAAATTTGGTTTCAGCCTGATGAAACCTGAGCAGCTTAGCAATTATAGGAAGACCTTCGGTCAGATGATGGCATTCAAAGGGACAATTATGCTCGAAAAACCGGTTCCCTCATGTCGGATCGTCAATACTTGA 2583 0.4355 MEESPSPKPELESTTTTLTCRDSELSNSNSSFCSSEFMLPNKNNNNDRGEVIVNGYIVYSRRKTKNLHEEEEEKKAIVKVEEESSEVVVIQNDVVLGRLKRNRKPTWKTVVDECEVGEEEKAVVFKMKSAEKKVVVVNRRPVTVKELFDTGLLDGVPVFYIGCKKDSTSGLRGVIQDGGILCSCCICNGRRIIPPSQFEIHACNTYKRAAQYICLENGKSLLDLLRACRAVPLHGLEVAVQNFLCSPPEEKYFTCKSCRGCFPSSSVERVGLICQSCVEERKSENNSIKRVGKRVRSPRPALFPSPSSTSELCNSSQTKRRWKKRAKSSKRNGSCSAFSKSASDPILFQKSLWKRKTKSYKLTVKLNTAPVTSTSLCPATSTSTCLSPETKSQWKIAKKYQRLHKLIFEENGLLDGAKVAYYARGQKLLVGIKRGSGIVCGCCNTLVSPSQFEVHAGWASRRKPYTYIYTSDGMSLHELAMFILKERKYTAKYNDDLCVVCWNGGNLLLCDGCPRSFHKECASVSSIPRGNWYCQICRNMFQRESFVADNVNAVAAERVEGVGPTEQIARCIRIVKDTDAEMGGCVLCGCSDFSRSGFGPRTIIFCDQCEKEYHVGCLRDHKMAFLKELPEGIWICCDDCTRIHSILENILVRVPERLPESLLDVIKMKQEEIFLGLPNEIDVRWRLLNGKIASPETRPFLLQAVSMFHECFDPIIDPVSGSDLIPAMVYGRSVQTQDFGGFYCALLMVNSCVVSAAMLRVFGRDVAELPLVATCYKNRGKGYFQTLFSCIERLLAFLNVKNFVLPAAEEAISIWTDKFGFSLMKPEQLSNYRKTFGQMMAFKGTIMLEKPVPSCRIVNT 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181337g00005 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 567 IPR013083 -
Stsc181337g00005 860 ProSiteProfiles Zinc finger PHD-type profile. 495 540 IPR019787 -
Stsc181337g00005 860 Pfam PHD-finger 498 539 IPR019787 -
Stsc181337g00005 860 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 484 561 - -
Stsc181337g00005 860 Pfam Tify domain binding domain 434 481 IPR032308 -
Stsc181337g00005 860 Pfam Tify domain binding domain 173 228 IPR032308 -
Stsc181337g00005 860 SUPERFAMILY FYVE/PHD zinc finger 479 539 IPR011011 -
Stsc181337g00005 860 MobiDBLite consensus disorder prediction 289 340 - -
Stsc181337g00005 860 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 740 825 IPR016181 -
Stsc181337g00005 860 MobiDBLite consensus disorder prediction 8 25 - -
Stsc181337g00005 860 PANTHER AUTOIMMUNE REGULATOR 81 852 - -
Stsc181337g00005 860 SMART PHD_3 587 641 IPR001965 -
Stsc181337g00005 860 SMART PHD_3 497 538 IPR001965 -
Stsc181337g00005 860 SUPERFAMILY FYVE/PHD zinc finger 575 638 IPR011011 -
Stsc181337g00005 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 643 IPR013083 -
Stsc181337g00005 860 MobiDBLite consensus disorder prediction 302 316 - -
Stsc181337g00005 860 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181337g00005 860 ProSitePatterns Zinc finger PHD-type signature. 498 537 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181337g00005 Stsc-Chr181337 14372 22653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181337g00005 98 859 PHD Transcription Factor Family AT2G36720 49.424 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc181337g00005 TDBD 9.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181337g00005 - - ahf:112728915 1571.6