Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181336g00014 ATGTCGGTGAATCTAACGGCAAACGCGATTCCCTCAATAATAGGCGGCGACGTGAACTCGAAGCCGCTGGTTCAGGTTATCGATTTGTCGCTGATTTCAAGCAGTAGCAACTCGCAGCAGCAGCGCTACCGCATGGTGCTTTCCGACGCCGTTTCGTCTCACCAAGCCATGCTCGCAACTCAGCTCAACGACCGAGTCCGAGCCAACCGAGTCAAGAAAGGCTCCGTCGTTCAGCTCCTCGAGTACATTTGTAGCCCCGTCCAAAACCGCATGATTATTGTAGTACTCAACATGGAAACTATAATCCTAGATTGTGAGATCATTGGGAATCCGAAACCGTTTGGGGAATCTAATTTACCAACTCAGAGAACAACGCCTGATAAAGTTGTGCAGACATTATCCAGATGTCATAATAATAATCAACAGACTTCTCAAACAGATCATACTGCAGAGAGTTTCCGGCCAGTAGTTCAACCTGCATATCAACCACCTCCAGTTTACAAAAACCGTGGGGCTATTTTGAAAAATGAGGCACCAGCACGGATCATTCCCATCGCAGCTTTAAATCCTTACCAAGGTCGCTGGGCAATCAAAGCAAGGGTAACTGCCAAAGGGGATATGCGCCGCTACAACAATGCTCGTGGAGATGGGAAAGTTTTTTCATTTGATCTCCTTGATTCTGACGGAGGTGAAATACGAGTAACCTGCTTTAATGCTGTTGTAGATCGTTTCTACAATGTAATTCAAGTTGGTAAAGTTTACACAATATCCAAAGGTAGCTTGAAACCTGCGAAGAAGGATTATAACCATTTAAAGAATGATTGGGAAATTGTATTGGATTCAAATTCGATTGTTGAACTTTGTCAAGATGAAGATGATTCTATACCTGAACAGAAATTCTCCTTCAGACCAATTATTGACCTTGAGAATGTTGACAATAATGCCATCCTTGATGTTATTGGGGTTGTGATATCTGTGAATCCTTCTGTTCCCATCATGAGGAAGAATGGGATGGAAACTCAAAGAAGAATTTTGAATATAAAGGACTCCTCTGGCAGGAATGTTGAGTTAACCCTTTGGGGAGAATTCTGCAACAGGGAAGGACAGAAGCTACAAGAGATGTCCGATGCCGGGTCCTTCCCCATTGTGGCAGTCAAGGCAGGGAAGGTTAACGACTACAGTGGAAAGTCTATTGGGACTATTTCTACCACACAGCTTTTCATAAACCCAGACTTGCCTGAGGCTCATACCTTAAGGGAATGGTTTGATAGAGTGGGAAAGGATTCAATTTCTCAATCCATTTCGAAGGATGTTTTGCCAGGAGGACCAAAGAATGAGATACGTAAAACCGTGTCTCAGGTCAAGGATGAAGGTCTGGGGCGGTCTGATAAGCCGGACTGGATAACAGTGAGGGCAACCATATCATTCCTCAAGACAGATACGTTTTGTTACACAGCTTGCCCTCTGATGATTGGAGACCGACAGTGCAATAAGAAAGTGACCAGGGCAGGCGACGCAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGGTATCTTCTTCAAGCCCAAATTGTGGATCATACAGGAATATCTTGGGTAACTGCTTTTCAGGAAGCAGCTGAAGAGATTATGGAGTACCCAGCAAAAGAGCTGTACTTGTTGAAGTATGAAGACCAGGATGATGACAAGTTCGGAGAAATAATTAAGAGTAGCCTATTCAACCATTTTGTGTTTAGGCTTAAAATCAAAGAGGAATTGTATGGTGATGAACAGAGGGTTAAGGTAACAGTGGTCAAGGCAGATAAAGTGGATTATTCTTCAGAGAGTAGACGTATGCTTGAATCCATTTCCAAGTTTTGTAGACAGTAA 1887 0.4361 MSVNLTANAIPSIIGGDVNSKPLVQVIDLSLISSSSNSQQQRYRMVLSDAVSSHQAMLATQLNDRVRANRVKKGSVVQLLEYICSPVQNRMIIVVLNMETIILDCEIIGNPKPFGESNLPTQRTTPDKVVQTLSRCHNNNQQTSQTDHTAESFRPVVQPAYQPPPVYKNRGAILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDMRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIQVGKVYTISKGSLKPAKKDYNHLKNDWEIVLDSNSIVELCQDEDDSIPEQKFSFRPIIDLENVDNNAILDVIGVVISVNPSVPIMRKNGMETQRRILNIKDSSGRNVELTLWGEFCNREGQKLQEMSDAGSFPIVAVKAGKVNDYSGKSIGTISTTQLFINPDLPEAHTLREWFDRVGKDSISQSISKDVLPGGPKNEIRKTVSQVKDEGLGRSDKPDWITVRATISFLKTDTFCYTACPLMIGDRQCNKKVTRAGDARWQCDRCNQEFEECDYRYLLQAQIVDHTGISWVTAFQEAAEEIMEYPAKELYLLKYEDQDDDKFGEIIKSSLFNHFVFRLKIKEELYGDEQRVKVTVVKADKVDYSSESRRMLESISKFCRQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181336g00014 628 Gene3D - 3 115 IPR012340 -
Stsc181336g00014 628 FunFam Replication protein A subunit 294 432 - -
Stsc181336g00014 628 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc181336g00014 628 CDD RPA1_DBD_A 184 287 - -
Stsc181336g00014 628 Gene3D - 294 434 IPR012340 -
Stsc181336g00014 628 Gene3D - 181 291 IPR012340 -
Stsc181336g00014 628 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Stsc181336g00014 628 Pfam OB-fold nucleic acid binding domain 196 268 IPR004365 GO:0003676
Stsc181336g00014 628 NCBIfam replication factor-a protein 1 (rpa1) 4 624 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc181336g00014 628 Pfam Replication factor-A C terminal domain 467 618 IPR013955 -
Stsc181336g00014 628 Pfam Replication protein A OB domain 305 409 IPR031657 -
Stsc181336g00014 628 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Stsc181336g00014 628 PANTHER REPLICATION FACTOR A 1, RFA1 195 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc181336g00014 628 FunFam Replication protein A subunit 4 115 - -
Stsc181336g00014 628 SUPERFAMILY Nucleic acid-binding proteins 300 425 IPR012340 -
Stsc181336g00014 628 CDD RPA1_DBD_C 451 624 IPR047192 -
Stsc181336g00014 628 Gene3D - 435 626 IPR012340 -
Stsc181336g00014 628 CDD RPA1_DBD_B 316 423 - -
Stsc181336g00014 628 FunFam Replication protein A subunit 433 625 - -
Stsc181336g00014 628 SUPERFAMILY Nucleic acid-binding proteins 448 625 IPR012340 -
Stsc181336g00014 628 FunFam Replication protein A subunit 181 290 - -
Stsc181336g00014 628 SUPERFAMILY Nucleic acid-binding proteins 181 295 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181336g00014 Stsc-Chr181336 119543 122401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181336g00014 26 620 Core DNA Replication Machinery Family AT2G06510 65.957 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181336g00014 K07466 - gmx:100792409 991.49