Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181336g00001 ATGAAACCATTTCTCTCGCTCAATTATCCTGATACGGCATACGACTGTGCACAAATTGATGATTCCAATTACTCCATGGCTCAACATGGTTCCTACACTTATGGAGATCCCTATTTCGCTAGTTCATCAATAGTTCCTTATGGACCACAGGCTATTAATCAACCTCAAATATTGCCTGAGATGCTGGGATTGCAATGCCCCAGAGTTGCTTTACCACTTGATAATATTGCCGAAGATAATGTCCCAATTTATGTCAATGCAAAACAATATCATGGTATACTGAGAAGGCGTCAGTCAAGAGCGAAGCTTGAGGCTCAGAACAAACTCATAAAAAATCGCAAG 342 0.4064 MKPFLSLNYPDTAYDCAQIDDSNYSMAQHGSYTYGDPYFASSSIVPYGPQAINQPQILPEMLGLQCPRVALPLDNIAEDNVPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181336g00001 114 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 114 IPR001289 GO:0003700|GO:0006355
Stsc181336g00001 114 ProSiteProfiles NF-YA/HAP2 family profile. 79 114 IPR001289 GO:0003700|GO:0006355
Stsc181336g00001 114 SMART cbf3 78 114 IPR001289 GO:0003700|GO:0006355
Stsc181336g00001 114 ProSitePatterns NF-YA/HAP2 subunit signature. 84 104 IPR018362 GO:0003677|GO:0016602
Stsc181336g00001 114 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 82 114 IPR001289 GO:0003700|GO:0006355
Stsc181336g00001 114 Gene3D - 80 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181336g00001 Stsc-Chr181336 108 841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181336g00001 30 114 CCAAT-HAP2 Transcription Factor Family AT1G30500 51.765 1.48e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc181336g00001 CBFB_NFYA 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181336g00001 K08064 - gmx:100793856 143.665