Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181335g00019 ATGGACACCCACTCCTCTCACGGCGCGGGGCCCCTCCGTTCCCGGAGCTCGCAGTCCCCTTCTCCCTCTCATTCCGCCTCAGCTTCCGCCACCTCTTCCATCCACAAGCGCAAGCTCGCCTCTGAAGACCACGCGCCACCCTTTCCCCCTTCATCCTTCTCCGCCGAAACCCGCGACGGCGCTCTCACCTCCAACGACGATCTCGAGAGCATCTCCGCCCGTGGCGCAGACTCAGATTCCGACGCCGACGACTCCGAGGACGCAGTTGTGGACGACGACGAGGACGACTACGACAATGACTCCTCCATGCGCAACTTCACCGCCGCTAGGCTCGACGGAAGCGCTGGCGCCGGTGGCGCCTCCGCTCCACGCAACACCAAGCTCAAGACCGAAAACTCAGTCACCGTGAAGATCGAGAGCTCCGACGGCGTCAACAAGGACGCTGGTGTAGCTGGAAATTCCGCCGCTGTGGGCACCGTTGCCACTGCCGGATCCGTCCCCGGTATAGTGGTGAAGGAAGACGCTAGCAAGATATTTACGGATAATTTGCAGACGAGTGGAGCTTACATTGCGAGAGAAGAGAGTCTGAAGAAAGAGGAGGAAGCGGGAAGGCTCAAATTTGTGTGCTATTCAAATGATGGTGTTGATGAGCATATGGTTTGGTTAATAGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCAAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGGAATCATGTTGTTGGAGGCATTACATATCGGCCATATGTAAGCCAGAAGTTTGGCGAGATAGCCTTCTGCGCAATTACAGCTGATGAGCAAGTAAAAGGTTATGGTACCAGATTGATGAATCACTTGAAACAGCATGCACGTGATGTAGATGGGCTCACACATTTTTTAACTTATGCTGACAATAATGCTGTTGGATATTTTATCAAACAGGGATTCACAAAGGAGATTCACTTGGAGAAAGATCGATGGCAAGGGTATATAAAAGACTATGATGGAGGAATTCTCATGGAATGCGAGATTGATCCAAAGCTCCCTTATACTGATTTGTCAACAATGATTCGTCGTCAACGGCAGGCTATTGATGAAAAGATCAGAGAGTTGTCAAATTGTCACATTGTTTATGCTGGCATTGATTTTCAGAAGAAAGAAGCTGGAATCCCTAAAAAAATTGTCAAAGTTGAGGACATCCCTGGATTGAGAGAGGCTGGTTGGACCCCTGATCAGTGGGGTCATTCACGATTCAGACTAAGCAACGCTACAGACGGTGCTGCAAATCTGAAGCATTTGACAGCGTATATGCGATCCCTTCTGAAGTCAATGCACGATCATGCTGATGCTTGGCCATTCAAGGAACCGGTTGATGCACGAGATGTTCCTGATTATTATGACATAATTAAAGATCCAATGGATCTGAAGACAATGACCAAGAGGGTGGAATCAGAGCAATATTATGTGACATTTGAGATGTTTGTTGCGGATGTGAAAAGAATGTTCGCAAATGCACGCACCTATAACTCTCCTGAAACCATCTATTACAAATGTGCTACAAGGTTAGAAGCACATTTTCAGAGTAAAGTGACATCAGGTGTCCAATCTAGTACCAAAATGCAGTAG 1668 0.4814 MDTHSSHGAGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSAETRDGALTSNDDLESISARGADSDSDADDSEDAVVDDDEDDYDNDSSMRNFTAARLDGSAGAGGASAPRNTKLKTENSVTVKIESSDGVNKDAGVAGNSAAVGTVATAGSVPGIVVKEDASKIFTDNLQTSGAYIAREESLKKEEEAGRLKFVCYSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECEIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIVKVEDIPGLREAGWTPDQWGHSRFRLSNATDGAANLKHLTAYMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMTKRVESEQYYVTFEMFVADVKRMFANARTYNSPETIYYKCATRLEAHFQSKVTSGVQSSTKMQ 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181335g00019 555 CDD Bromo_gcn5_like 447 544 - -
Stsc181335g00019 555 Gene3D - 201 365 - -
Stsc181335g00019 555 PANTHER GH11602P 22 551 IPR037800 GO:0004402
Stsc181335g00019 555 Pfam Acetyltransferase (GNAT) family 252 330 IPR000182 GO:0016747
Stsc181335g00019 555 SMART bromo_6 440 549 IPR001487 GO:0005515
Stsc181335g00019 555 MobiDBLite consensus disorder prediction 56 71 - -
Stsc181335g00019 555 Gene3D - 438 555 IPR036427 GO:0005515
Stsc181335g00019 555 CDD NAT_SF 252 306 - -
Stsc181335g00019 555 SUPERFAMILY Bromodomain 437 544 IPR036427 GO:0005515
Stsc181335g00019 555 ProSitePatterns Bromodomain signature. 464 522 IPR018359 -
Stsc181335g00019 555 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 214 364 IPR016181 -
Stsc181335g00019 555 PRINTS Bromodomain signature 476 492 IPR001487 GO:0005515
Stsc181335g00019 555 PRINTS Bromodomain signature 462 475 IPR001487 GO:0005515
Stsc181335g00019 555 PRINTS Bromodomain signature 511 530 IPR001487 GO:0005515
Stsc181335g00019 555 MobiDBLite consensus disorder prediction 1 134 - -
Stsc181335g00019 555 Pfam Bromodomain 452 534 IPR001487 GO:0005515
Stsc181335g00019 555 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 212 359 IPR000182 GO:0016747
Stsc181335g00019 555 ProSiteProfiles Bromodomain profile. 459 530 IPR001487 GO:0005515
Stsc181335g00019 555 MobiDBLite consensus disorder prediction 80 99 - -
Stsc181335g00019 555 MobiDBLite consensus disorder prediction 1 35 - -
Stsc181335g00019 555 FunFam Histone acetyltransferase KAT2A 202 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181335g00019 Stsc-Chr181335 61601 67184 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Stsc181335g00019 Bromodomain 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181335g00019 K06062 - gmx:100791610 862.833