Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181335g00014 ATGGCTAACAACCCTTCCGACCCTCCCGCCGATGACTTCCTCGAACAAATACTTCGCCTTCCAACCTTCGCCTCCCCCGACCCTGCCCTCGCCGGACCCGATATTTCAGCCCTTGCGCCGCCCCCCGCCTCCCCTATCATGCTTCAGCTCAACTCCGCCGATGCTGCTCCTCACCATCTCGCTGCCGGAGGGGCTTTCCACTCTCCCATGTACCACTTAGGTCTGAGCTTGGACCAAGGGAAAGGAGCAGATGCAGGACCAGCAGGGTTCTTGAAGCCACCGGAAGAGCCCTCCGGTAGCGGCAAGCGGTTTCGCGATGACGTCCTTGATGGCAGAGTTAAGAACGTTTTTCATGGCCAACCAATGCCTACTACTATTCCGGCAGCTCCACATCCTCCAACAATGCGTCCTAGGGTGCGGGCCAGAAGAGGACAGGCTACAGACCCACACAGCATAGCTGAACGGTTGCGCAGAGAAAGAATCGCAGAAAGAATCAGGGCTTTGCAAGAGCTGGTTCCAAGTGTCAACAAGACAGATAGAGCTGCAATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTGGTGACTGACATCCCATTATCATCAGTTGAGGAGGAAGGCGGTGAAGGTGGAAGAAACCAGCCGGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAGGTGGCTAAGCTTATGGAAGAAAACGTTGGAGCAGCCATGCAGTTTCTTCAATCCAAGGCACTCTGCATCATGCCAATCTCACTTGCATCGGCGATATACCAGTCACAACCCCCGGACACCTCTAGTATAGTGAAGCCAGAAGCTAACCCTCCTCCATAG 906 0.5364 MANNPSDPPADDFLEQILRLPTFASPDPALAGPDISALAPPPASPIMLQLNSADAAPHHLAAGGAFHSPMYHLGLSLDQGKGADAGPAGFLKPPEEPSGSGKRFRDDVLDGRVKNVFHGQPMPTTIPAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPEANPPP 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181335g00014 301 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 100 280 - -
Stsc181335g00014 301 FunFam Basic helix-loop-helix transcription factor 140 202 - -
Stsc181335g00014 301 Pfam Helix-loop-helix DNA-binding domain 150 194 IPR011598 GO:0046983
Stsc181335g00014 301 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Stsc181335g00014 301 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 204 IPR036638 GO:0046983
Stsc181335g00014 301 Gene3D - 140 202 IPR036638 GO:0046983
Stsc181335g00014 301 SMART finulus 151 200 IPR011598 GO:0046983
Stsc181335g00014 301 MobiDBLite consensus disorder prediction 116 149 - -
Stsc181335g00014 301 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181335g00014 Stsc-Chr181335 50807 54562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181335g00014 66 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.913 1.07e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181335g00014 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181335g00014 - - ccaj:109808880 461.07