Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181335g00013 ATGGAGAGTTCTATTTTCCAAAATGATGATGCGCTGAATCTGGAGGCCACAGAATTAAGGTTAGGTTTGCCTGGAAGAACCAATAACAAGAGGTCTTCACCAGAAGCCAGCAGCGTTGATTCTAGTGGTCCTAGTAATGCTACTGATGACGATGAAGATGATCACCATGAAAATTCGGTCCAACCTCCTGCTGCAAAGGTTCAAGTAGTAGGGTGGCCACCAGTTAGATCGTTTAGGAGGAACAGCATGCTGCAGCAACAAAAAGAGATGATGAAGAAGGATGATGATGGATGCGGGGGGATGTACGTGAAGGTGAGCATGGCGGGTGCACCTTACTTGAGGAAGATAGATCTCAAGCTTTACAATTCTTACTCTCACCTTCTCAACGCCCTCCAGAATCTCTTCAAATGCACTTTTGGCCAATATTCTGAGAGAGAAGGTTACAACGGATCTGAATATGCTCCTACTTATCAAGATAAGGACGGTGATTGGATGCTCCTTGGAGACGTTCCTTGGGACATGTTCAGCACTTCCTGCAAGAGGCTTAGGATTGTGAAAGGATCTGAAGCACAGGGCTTGACTTCTTTATAA 591 0.4535 MESSIFQNDDALNLEATELRLGLPGRTNNKRSSPEASSVDSSGPSNATDDDEDDHHENSVQPPAAKVQVVGWPPVRSFRRNSMLQQQKEMMKKDDDGCGGMYVKVSMAGAPYLRKIDLKLYNSYSHLLNALQNLFKCTFGQYSEREGYNGSEYAPTYQDKDGDWMLLGDVPWDMFSTSCKRLRIVKGSEAQGLTSL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181335g00013 196 ProSiteProfiles PB1 domain profile. 100 192 IPR000270 GO:0005515
Stsc181335g00013 196 Gene3D - 95 196 - -
Stsc181335g00013 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 191 IPR003311 GO:0005634|GO:0006355
Stsc181335g00013 196 FunFam Auxin-responsive protein 95 196 - -
Stsc181335g00013 196 SUPERFAMILY CAD & PB1 domains 99 184 - -
Stsc181335g00013 196 MobiDBLite consensus disorder prediction 26 45 - -
Stsc181335g00013 196 Pfam AUX/IAA family 30 194 IPR033389 -
Stsc181335g00013 196 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181335g00013 Stsc-Chr181335 47681 48724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181335g00013 103 195 B3 DNA Binding Superfamily AT2G46530 33.333 6.72e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc181335g00013 AUX_IAA 5e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181335g00013 K14484 - gmx:100792134 251.136