Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181335g00002 ATGGCGAATCGGGTGGTGAAGGTGAAGAGGGAGACGATTGCAGCATGCATGACTTGCCCGCTATGCAACAAGCTCTTCAAAGAAGCCACCACCATATCCGAGTGCCTTCACACCTTTTGCAGGAAGTGCATTTATGATAAAATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTCATTTGGGTTGTGTTCCACTCGAAAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTTCCCTTAAAGGGAAGAAAGGTGACAACGACACCTGAACCTGCTGCCCCCTCAGTATCACTACCAGCAAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTCAACAAGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTAGTCTGCGATCCTCTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGAAATACTAGAAAATCATCCCGAGAGTTCAAGTTCACGCGACACTTCAAATAAGTTTGCTCAAAATACTGGACAGAGTGAAGGCAGTCAATCCTTACCAAATAATGGAACAGTGAATGGTTCCGAATCATGGGATGCAAAATTGGATCTTTGGAAGCCCTTGAATTGTTTAGTAGAAGTTGCAAGTAGGAGCAAATCTTTCAAGTCTAATGCACAAGGGTCTGATGCTAAACCAGAAACCGTTCAAGTAAATGAGACTAATTCTCAAGTTCTAAAAACCAAAAATAAGGAAAATAAACGCAAGGGGAAAACTGAGGATGAAAAGACTAGCACTTGTCCTGTCTCTTCTGATACAGCAAAACCCAATAAATCGCGTAGAGTTCGCCGTAGAAAGGAACCTCCTTTTGGGGAATCAGGCATATTACCCCAATCTGTGCTGGATTCTAACAGCAGTAAACACTTAAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGACAACCAGGAAGGAGACGCACCCTTGCCTCAAATTCCTTCAAGTTATGTGAGAATAAAGGATGGAAGCATACCTGTCTCATTTATTCAAAAATACCTAGTGAAGAAACTAGAGCTGACAAGTGAAGCAGAGGTTGAGATTAAATGTATGGGGCAACCAGTGCTCCCTACACTTCGGCTACAAAATTTGATCGAGTTGTGGCTGGATTCTGCGGCCACATCACAGCGAATTCCAGCAACCATTGGGTCATCAGCAAAGGATTTTGTGATGGTCCTGGGATATGCTAGGAAGGTCCCACACCCTTGA 1281 0.4333 MANRVVKVKRETIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKITDEELECCPICNIHLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVTTTPEPAAPSVSLPARRKERSLSSLVVSTPRVSQQATMTGRRTKPTRKASSLRSSSFSIEKPIKKEEEILENHPESSSSRDTSNKFAQNTGQSEGSQSLPNNGTVNGSESWDAKLDLWKPLNCLVEVASRSKSFKSNAQGSDAKPETVQVNETNSQVLKTKNKENKRKGKTEDEKTSTCPVSSDTAKPNKSRRVRRRKEPPFGESGILPQSVLDSNSSKHLRTGPIWFSLVASDNQEGDAPLPQIPSSYVRIKDGSIPVSFIQKYLVKKLELTSEAEVEIKCMGQPVLPTLRLQNLIELWLDSAATSQRIPATIGSSAKDFVMVLGYARKVPHP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 114 150 - -
Stsc181335g00002 426 SUPERFAMILY RING/U-box 14 83 - -
Stsc181335g00002 426 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Stsc181335g00002 426 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 91 199 - -
Stsc181335g00002 426 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Stsc181335g00002 426 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 422 IPR044807 GO:0004842
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 251 269 - -
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 168 199 - -
Stsc181335g00002 426 CDD RING-HC_PCGF 17 60 - -
Stsc181335g00002 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 113 IPR013083 -
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 225 250 - -
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 151 167 - -
Stsc181335g00002 426 SMART ring_2 19 59 IPR001841 -
Stsc181335g00002 426 MobiDBLite consensus disorder prediction 225 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181335g00002 Stsc-Chr181335 4964 9828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181335g00002 2 345 C3H Transcription Factor Family AT2G30580 53.143 1.50e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181335g00002 K16277 - gmx:100793731 657.521