Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181334g00020 ATGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCACTGCTCCTCAATTCAAATATGATGTATTCATCAGTTTTAGAGGTTCAGACACTCGCCGGGGCTTTTTCAGCCATTTGCTCACGGCATTAAATTTGAAAAAGATTGATGCATTTGTAGATTACAAGCTTAAAGAAGGAAATGAAATATTGCCAGCACTTTACGCAGCAATTGAACAATCACAAATTGGGCTAATTATTTTCTCGGAAGATTATGCCTCTTCAAAATGGTGCTTAGAAGAACTTGTCAAAATAACTGAATGCCAAAAAGAGAAGGGACAAATCATCATACCTATTTTCTACAATGTTGAGCCTACAGAAGTTCGACATCAGAAGGGGTCCTATGCAGTTGCATTTCTTAATCATGAAAATGATTTCAAGGACGATGTCCGTAAATGGAGAGCTGCACTTAAGGCTGTCGCGGATTTGTCAGGATTCCATTCCAAAAATTTTCGAAGTGAGGCTGCGCTCATTGAAGCAGTTGTCAAACACATATTGAAAACTTTAGATGATATGCACTCAGCCAATAACTTTCAAGGCCTTGTTGGAGTTAACAAACCAATAGTAGAACTTGAGTCAATAGTTTTTGCCAATGGCTCAAAAGATATTCGTGTTATAGGGATTTGGGGCATGGGTGGCATAGACGAAAAAGATTTAAACATTGGTGTTCCCAATGGAGTACCAAATCATGTTTTGAGAAAACTTCGTCGAAGAAAGATTCTTGTTGTTCTTGATGATGTCAGTACTTGTGATCAAATCACAGACTTAGTTGGAGGACATAGTTGGTTGGGTCCTGGTAGCACAATCATTGTTACAACTAGAGATAAGCATGCAATTTCTAAAGAAGTAGATTTCATATACAAAGTAAAGGCATTGGAATCCAATGATGCTCGAAAGCTTCTAAATTTGCATGCCTTTGATGGAACTGATGAACATTTCCTTGACTTTCGTTGGCATAATGTTATGTCCAAAATGGTTGAATATGCTAAAGGCATCCCATTAGCATTGAAAGTTTTGGGTTCTTTTCTTTATGGAAAATATGTTGAAGAATGGGAATGTCAATTGCAGAAGCTTCAGAGGATGCCCTATCCAGAGATTCATAATGTGTTGAGGTTATGTTATGAAGGATTGGATCACCAAGAGAAGAGAATATTTCTATACATTGCTTGTTTCTTCAAAGGGGTTGAAGGAAAGGATACAGTAGTAAATTTACTAGATGCTTGTGGTTACTCAACAGCTATTGCATTGGAAACTCTGCAAAATAGAGCTCTTATAACCATTGAGCATTGTGTATCCATGCATGATTTGATTCGAGACATGGGCAGATGGATTGTGCGTCAAGAAAGCTTCAATAAGCCTGGAGAACAATGCCATTTATGGGATCCTCATGATATTTATCGCGTGCTGAAGCATAGAGAGGGCACGAACCATATTGAAAGCATAACCTGGAACATGTCAAGTGTTAGTGCTGACATAAATCTAAGTCCTCATTTTTTTGCTAGGATGGACAATCTTAAACTTCTGAGGTTTTATTACAATAATAATAGTAGTAGTAATTATTACTATTATTATTATTATTATTGTTCGGGTAATAACACTTGCAAAGTGCATCTTCCAGAAGGTCTTGAAATACTGCCACAGAAACTGCTACTCTTTCATTGGGACAATTACCCTGCGAAATCCTTTCCAACAGCATTCAATGCAGAGTGTCTTGTTGAAATTCGTATGAAAGAAAGTCGTGTTGAAAAGCTCTGGGATGGAGTACAGGATATACCAAATATGAAAAGGATTGTTCTTAATGGATCCAAACAATTGATGGAGCTTCCAGATTTATCTAAAGCCTTGAGTCTTCAAGAATTAGAACTCATGGGATGCATAAATTTGCTTTCAGTTCACCCATCAATTTTTTCTCTCCCAAAACTTGTCAGGGTGACCTTATGGAATTGTTTAAGGCTCAACAATATTCCAGAGTGGTCTGAAGTGAAAAAGGAAGTACTGAGTTCTGCATCAGCATCGAGCTCATCATCGCACACTTGGCCTTCCAATCTTCAATACTTGAACTTGGAGGGATGTGTGAGTCTGAAGAATCTACCAGACAGCTTTTCTACCCTCACCTCTCTTAAAGTGCTTTACCTTGGAGGGTGCATAGAGTTAGACACATCAAATCTACACATCTTATTTGATGGTTTAACTTGTTTAACACATCTAGACTTGGACGGGTGTGATAGGTTGTATCAAGTCCCACATAACATCAACAACTTATCATTGTTAGAGTCCTTATCACTCAGGGACACTAATGTGAAAAGCATTCCAGAAACTATCAAACACCTTCCATGCCTCAGAAATCTCTTCTTAACCAGTTGCAGGGGGCTCCAGTCACTGCCTCAGATTCCACCATCTCTCCAGTATTTACTAGCCAATAATTGCAGATCGTTGGGGCTCGTGTTCACTCCGACAAATGAACTACTCGAACAACACCTTGCATCCTACGAAAACGAGTATTATATTGGAGGCACGGTTTTTTCATTCAAGAATTGCCCAAACTTAAAGAAAGACGCAGTTGGTGCTATTCATGAATATGTCAAGTGCTGCAATGAAGAGAAAAGATCATTGAGAGATTCTAGGAGAGTAGGGAATAAGAGAAAGCGTCATTGA 2694 0.3846 MTSSSSSSSSSSSSTAPQFKYDVFISFRGSDTRRGFFSHLLTALNLKKIDAFVDYKLKEGNEILPALYAAIEQSQIGLIIFSEDYASSKWCLEELVKITECQKEKGQIIIPIFYNVEPTEVRHQKGSYAVAFLNHENDFKDDVRKWRAALKAVADLSGFHSKNFRSEAALIEAVVKHILKTLDDMHSANNFQGLVGVNKPIVELESIVFANGSKDIRVIGIWGMGGIDEKDLNIGVPNGVPNHVLRKLRRRKILVVLDDVSTCDQITDLVGGHSWLGPGSTIIVTTRDKHAISKEVDFIYKVKALESNDARKLLNLHAFDGTDEHFLDFRWHNVMSKMVEYAKGIPLALKVLGSFLYGKYVEEWECQLQKLQRMPYPEIHNVLRLCYEGLDHQEKRIFLYIACFFKGVEGKDTVVNLLDACGYSTAIALETLQNRALITIEHCVSMHDLIRDMGRWIVRQESFNKPGEQCHLWDPHDIYRVLKHREGTNHIESITWNMSSVSADINLSPHFFARMDNLKLLRFYYNNNSSSNYYYYYYYYCSGNNTCKVHLPEGLEILPQKLLLFHWDNYPAKSFPTAFNAECLVEIRMKESRVEKLWDGVQDIPNMKRIVLNGSKQLMELPDLSKALSLQELELMGCINLLSVHPSIFSLPKLVRVTLWNCLRLNNIPEWSEVKKEVLSSASASSSSSHTWPSNLQYLNLEGCVSLKNLPDSFSTLTSLKVLYLGGCIELDTSNLHILFDGLTCLTHLDLDGCDRLYQVPHNINNLSLLESLSLRDTNVKSIPETIKHLPCLRNLFLTSCRGLQSLPQIPPSLQYLLANNCRSLGLVFTPTNELLEQHLASYENEYYIGGTVFSFKNCPNLKKDAVGAIHEYVKCCNEEKRSLRDSRRVGNKRKRH 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181334g00020 897 Gene3D - 15 188 IPR035897 -
Stsc181334g00020 897 PRINTS Disease resistance protein signature 218 233 - -
Stsc181334g00020 897 PRINTS Disease resistance protein signature 342 356 - -
Stsc181334g00020 897 PRINTS Disease resistance protein signature 715 731 - -
Stsc181334g00020 897 Gene3D Ribonuclease Inhibitor 489 678 IPR032675 -
Stsc181334g00020 897 Gene3D Ribonuclease Inhibitor 679 864 IPR032675 -
Stsc181334g00020 897 Gene3D - 304 391 IPR042197 -
Stsc181334g00020 897 Pfam TIR domain 20 196 IPR000157 GO:0007165
Stsc181334g00020 897 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 184 - -
Stsc181334g00020 897 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 159 IPR035897 -
Stsc181334g00020 897 Pfam NB-ARC domain 243 375 IPR002182 GO:0043531
Stsc181334g00020 897 Pfam Leucine Rich Repeat 583 602 IPR011713 -
Stsc181334g00020 897 Gene3D - 236 299 IPR027417 -
Stsc181334g00020 897 ProSiteProfiles TIR domain profile. 19 182 IPR000157 GO:0007165
Stsc181334g00020 897 SUPERFAMILY L domain-like 446 826 - -
Stsc181334g00020 897 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 694 824 IPR044974 GO:0006952
Stsc181334g00020 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 401 IPR027417 -
Stsc181334g00020 897 SMART till_3 20 156 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181334g00020 Stsc-Chr181334 111202 115311 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181334g00020 21 853 WRKY Transcription Factor Family AT4G12020 29.573 2.54e-89 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181334g00020 - - aip:107627842 1349.34