Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181334g00017 ATGAAGAAATATGGACAGATTGTGATACCTATATTCTACCAGGTAGATCCATCAGATGTACGCCATCAAAATGGGTGCTACAAAAATGCGTTCACTAAACATGAAAAAAGGTTCAAGGGCAACATAATGAATGTAGAGAAATGGAGATCTGCTTTGAAGAATGTTGCTAATTTATCAGGATTCCATTCAACACATTTTGGGACTGATGCTAAACTTATTGAAAAAGTGGTTCAACGCGTGTTAAATAGGTTGAATCATATGCAACAATTCGATTCACACGGTCTTATTGGAATTAGTAAGCCAATTGCTGATCTTCAATCTCTAATCTTTTGTAATGGAACAAAAGATGTTCGTGTTATTGGAATTTGGGGCATGGGGGGTATAGGTAAAACAACTATTGCTCATACATTATTTCATAAACTCTGTTCAGAATATGAAAGTTGTTATTTTTTGACAAATGTCAAAGAACAAATAGAAAAATGTGGTGGAGTAGCTCAATTGCAAGCCAAGCTTCTTTCCATATTACTTGAGGAAAAAGATTCCAATGGAACATTATCTGGTCTTTTGAGGAGGCTCTGCCGCAAAAAGATCCTTGTTGTTCTTGATGATGTTATTAATCCAAATCAAGTAAGAGAATTAGTTGGGGGTCGGGGTCAACATAGTTGGTTGGGTCCTGGTAGTAGAATCATTGTCACAACCAGAGATAAGCATGTCCTTCGCAAAGAAGCTGACGATATATATGAAGTGAAGGCTTTAACATTTTACGAATCTCTACAATTGTTAACTTTGCATGCCTTTGATGGAAATAACATCCCAGAGGGTTACAATGTTCTTGTTGTGGAAATTGTTGAATATGCTAAAGGCGTTCCATTAGCTTTAAAAGTTTTGGGTTGTTTTCTTTATGGCAAAAGTGTTGAAGAATGGAGAAGTCAGTTGGATAAGCTTCAAAAGATGCCATTTGAAGGAATTCAAAGAGTTTTGAGATTGAGCTGTGATGGATTAGATCGCCATGAAAAAAAGATACTTCTATATATAGTCTGTTTCTTTACATGTGATGCTGAAGCACATAGTGCAGAAGATGTAAAGATATTACTGGATGCATGTGGCTTCTCAACTACTATTGCTTTGACAACCCTCCAAGATACAAGTCTCATAACTTGA 1161 0.3618 MKKYGQIVIPIFYQVDPSDVRHQNGCYKNAFTKHEKRFKGNIMNVEKWRSALKNVANLSGFHSTHFGTDAKLIEKVVQRVLNRLNHMQQFDSHGLIGISKPIADLQSLIFCNGTKDVRVIGIWGMGGIGKTTIAHTLFHKLCSEYESCYFLTNVKEQIEKCGGVAQLQAKLLSILLEEKDSNGTLSGLLRRLCRKKILVVLDDVINPNQVRELVGGRGQHSWLGPGSRIIVTTRDKHVLRKEADDIYEVKALTFYESLQLLTLHAFDGNNIPEGYNVLVVEIVEYAKGVPLALKVLGCFLYGKSVEEWRSQLDKLQKMPFEGIQRVLRLSCDGLDRHEKKILLYIVCFFTCDAEAHSAEDVKILLDACGFSTTIALTTLQDTSLIT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181334g00017 386 Pfam NB-ARC domain 114 325 IPR002182 GO:0043531
Stsc181334g00017 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 345 IPR027417 -
Stsc181334g00017 386 Gene3D - 252 335 IPR042197 -
Stsc181334g00017 386 PRINTS Disease resistance protein signature 119 134 - -
Stsc181334g00017 386 PRINTS Disease resistance protein signature 191 205 - -
Stsc181334g00017 386 PRINTS Disease resistance protein signature 286 300 - -
Stsc181334g00017 386 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 386 IPR044974 GO:0006952
Stsc181334g00017 386 ProSiteProfiles TIR domain profile. 1 84 IPR000157 GO:0007165
Stsc181334g00017 386 Gene3D - 1 80 IPR035897 -
Stsc181334g00017 386 Gene3D - 81 250 IPR027417 -
Stsc181334g00017 386 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 61 IPR035897 -
Stsc181334g00017 386 Pfam TIR domain 3 90 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181334g00017 Stsc-Chr181334 99896 102310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181334g00017 6 386 WRKY Transcription Factor Family AT4G12020 33.850 5.70e-50 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181334g00017 - - ahf:112730190 484.952