Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181334g00007 ATGGATTTGGTTGATTACTATGATAATAATGAGAAGTTTAGAGTGTTTAAGGATATAGTGTTTGGCTTGACTGAAGAATCTTCAAGGCCTTGTTTGGGAGATTTTTTTCCTTTGTTAGGGTTTCTGGATTCACGTGGTGCACGTGCAAGGACAAAAGATCGCCATGACAAGTTGTATGCAGTTATTAATGGTGCCATGGAAGAAAGAATTCGCTTGAGGGATTCAAAAGGTGATTATTCTGGAGAGTACAATGATGCAGTGGATTTCCTTTTGGATCTTGTCCATGAAGAGAGTTCCGAATTCGATCGCCATGATGTTCTTGATTTATTAATGGATTTATTTGTTGCTTCAATAGACACAACATCAAGCACATTAGAATGGGCAATGGCAGAGTTGATGCATAGTCCAACAAAATTGCACAAAGTTAGAGAAGAGCTTCAACAATCACTTGGCAAAAATGGAGAAGTTGAAGAGTCTCATATCTCAAAGCTCCCATACCTTAATGCAATTGTGAAAGAAACTCTGAGGCTTCATCCACCAACACCATTGCCCGTACCCCGCAAAGCAAATGATGATGTAGAGTTAGGTGGCTTCACTGTGCCTAAAAATGCACAAATCCTAATTAATGTGTGGTCAATGGGAAGAGACTCGGAAATTTGGGTTAACCCTAATTCATTTGAACCTGAGAGATTTTTGGATAGTGAAATTGATTTTAAGGGTACAAATTTTGAGTTGATTCCATTTGGTTCAGGTAGAAGAATTTGTCCTGGATTACCATTGGCGTCAAGGACTTTGAGTTTTATGTTGGGATCACTTTTGTACCATTTCAATTGGAAAATTGCTAATGACATGAATCCAGAAGATATAGATATGAGTTTTAGTCATGGGCTTACCTTACATAAGGCCCAACCTTTACTTCTTGTACCTATTAAAGTTTAG 939 0.3802 MDLVDYYDNNEKFRVFKDIVFGLTEESSRPCLGDFFPLLGFLDSRGARARTKDRHDKLYAVINGAMEERIRLRDSKGDYSGEYNDAVDFLLDLVHEESSEFDRHDVLDLLMDLFVASIDTTSSTLEWAMAELMHSPTKLHKVREELQQSLGKNGEVEESHISKLPYLNAIVKETLRLHPPTPLPVPRKANDDVELGGFTVPKNAQILINVWSMGRDSEIWVNPNSFEPERFLDSEIDFKGTNFELIPFGSGRRICPGLPLASRTLSFMLGSLLYHFNWKIANDMNPEDIDMSFSHGLTLHKAQPLLLVPIKV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181334g00007 312 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 248 257 IPR017972 GO:0005506|GO:0016705
Stsc181334g00007 312 PRINTS E-class P450 group I signature 255 278 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS E-class P450 group I signature 245 255 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS E-class P450 group I signature 125 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS E-class P450 group I signature 168 186 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS E-class P450 group I signature 209 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS E-class P450 group I signature 105 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 SUPERFAMILY Cytochrome P450 9 309 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS P450 superfamily signature 246 255 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS P450 superfamily signature 255 266 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS P450 superfamily signature 116 133 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 PRINTS P450 superfamily signature 169 180 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 FunFam Geraniol 8-hydroxylase 55 308 - -
Stsc181334g00007 312 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 311 - -
Stsc181334g00007 312 Gene3D Cytochrome P450 4 307 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00007 312 Pfam Cytochrome P450 12 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181334g00007 Stsc-Chr181334 28850 31362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181334g00007 7 311 Cytochrome P450 AT2G45570 50.325 7.58e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181334g00007 - K20556 gmx:100809483 367.081