Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181334g00006 ATGGAAGAAGTGGGAAGCCATTATTGGAGATCACTATTCACAAACATGGATTACTACTACCTTACACTAACACTAATGATCTTATCCTTTCTTGTCTCAAAACTTCTTTTTTACTTCATCGTCCAAAAACAACATTCAAAGCTTCTTCCACCGGGTCCTAAACAATACCCCATCATTGGAAACCTCTTACAAGTTCTTCTTATCAGGAAAAACAATTCTAATGCTCTTGAATCATTCATGAACCTCTCCAAAACTTATGGACCTATAATTACCTTCAAATTAGGCACTCTTACCTCCATATCGGTTTATTCTCCAGAAATAGCCAAAGAAGTACTCCAAAAAAATGATATAATCTTAGCCAATAGAAGAGTCCCTTATACTTTTTTTACAGCAATGAAGGAACATAGCAAGAATTCAATTATTGCCTTACCTTCGTCATCAACGAAATGGAGAGTTTATAGAAAAGCTTGTGCGACAAGAATATTCTCAACTCAACAACTTGACTCCACACAAATCCTAAGGAAGAGAAAGGTTCATGAATTACTCGATTTTTTGCATGAGTGTTACAAAAAAGGTGAAGCTGTAAACATCGGTGAGGCGATTTTTAAAACGATGTTGAATATATCATCAAACTCTTTTATTTCTAAGAATTTTGTTCAGTACCATGATAATGGTGAGAAGTTTAAAGTGTTTAAGGATATAGCTTTTGGCTTGACTGAAGAATCTTCAAGGCTTTGTTTGGGAGATTTTTTTCCTTTGTTAGGATTTTTTGGTGGGCGTGGTGCACGTGCAAGAACAAGAGAACGCTATGCAAAGCTGTCTGCAGTTTTTGATGGTGCCATAGAAGAGAGAATTCGAACGAGGGATTTAAAAGCTGATTCTAGTGATTGCAATGATATATTGGATTCCCTTTTGGATCTTGTCAATGAAGAGGGTTCTGAATTGAATCGCCATGATGTTTTGCATTTATTGATTGATTTATTTATTGCTGCAATAGACACAACATCAAGCACATTAGAATGGGCAATGGCAGAGTTGATACATAGTCCAACAAAATTGCATAAACTTAGAGAAGAGCTTCAACAATCACTTGGCAAAAATGGAGAATTTGAAGAATCTCATATATTAAAACTCCCATACCTTAATGCGGTTGTTAAAGAAACTTTGAGGCTTCATCCACCAGGACCAATGCTCATACCCCACAAAGCAAATGACGATGTGGAGCTAGGTGGCTTCATTGTGCCCAAAAATACACAAGTCGTAGTTAATGCATGGTCAATTGGAAGAGACTCGGACATTTGGGCTAACCCTATTTCATTTGAACCTGAGAGATTCTTGAATAGTAAAATTGATTTTAAGGGTAAACATTTTGAGTATATTCCATTTGGTTCTGGAAGAAGAATTTGCCCTGGATTACCATTGGCTTTAAGGAGTTTGAGTTTTATATTGGCATCACTTTTTTATCATTTCAATTGGAAAGTTGCTAATGGGATGAATCCAGAAGATATAGATATGACTTGTAGTTATGGCCTTACCATGCATAAGGCACAACCTTTACTTCTTATACCTATACCTATCAAAGTTTAG 1587 0.3604 MEEVGSHYWRSLFTNMDYYYLTLTLMILSFLVSKLLFYFIVQKQHSKLLPPGPKQYPIIGNLLQVLLIRKNNSNALESFMNLSKTYGPIITFKLGTLTSISVYSPEIAKEVLQKNDIILANRRVPYTFFTAMKEHSKNSIIALPSSSTKWRVYRKACATRIFSTQQLDSTQILRKRKVHELLDFLHECYKKGEAVNIGEAIFKTMLNISSNSFISKNFVQYHDNGEKFKVFKDIAFGLTEESSRLCLGDFFPLLGFFGGRGARARTRERYAKLSAVFDGAIEERIRTRDLKADSSDCNDILDSLLDLVNEEGSELNRHDVLHLLIDLFIAAIDTTSSTLEWAMAELIHSPTKLHKLREELQQSLGKNGEFEESHILKLPYLNAVVKETLRLHPPGPMLIPHKANDDVELGGFIVPKNTQVVVNAWSIGRDSDIWANPISFEPERFLNSKIDFKGKHFEYIPFGSGRRICPGLPLALRSLSFILASLFYHFNWKVANGMNPEDIDMTCSYGLTMHKAQPLLLIPIPIKV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181334g00006 528 FunFam Geraniol 8-hydroxylase 270 522 - -
Stsc181334g00006 528 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 28 525 - -
Stsc181334g00006 528 CDD CYP76-like 83 523 - -
Stsc181334g00006 528 Pfam Cytochrome P450 50 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Stsc181334g00006 528 Gene3D Cytochrome P450 39 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 423 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 SUPERFAMILY Cytochrome P450 50 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS P450 superfamily signature 469 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181334g00006 528 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181334g00006 Stsc-Chr181334 22078 24322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181334g00006 16 524 Cytochrome P450 AT2G45550 43.301 3.23e-147 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181334g00006 - - gmx:100809483 498.434