Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181333g00014 ATGGAAAATGTGGTGGCAACCGTGAGCGGCTACCATGGCTCCCAGCGGTTCAATCTCATCAGGCTGATTTCACATTCTGGCGCCAATTACGTTGGGTCAATGTCGAAATCGATCACGCACCTGGTTTGTTGGAAATTTGAGGGAAGAAAGTATGAGATTGCCCAAAAGTTTGATATAATTATAGTCAACCACCGATGGATTGAAGACTGCATAAAGGAAGGAAGGCGTGTGCCAGAAGAGTCATATATCTTGCAAAGTGGATATGAAGTTGGGCCACTGTTGCTGGAAGTTCCAGCAACTAGATTGACAAAAAATGTAGTTACACGTGATCAAATATATGATCTTGACTCTAGAGAGCAAACAACTGAGCATGACAAGTCCAGTGCTTATCCTTCTAGACGGTCAAGGAAAGGTAAAAGAAGCATCTGTGCTGGTAATGGAGTTTGTACTGTGGCTGGACCTTCTCGTAAAGGCAGAAGGATTGTGAATGATATTGTTGATGAAGTGGTGTTGGACCCTTTATTTGATGTAGTCCAGGATGACCGCCATAGTAGATGGGATAGATTAAACCATGATGCTGCACCTACCACTAGCCTTTCTAGTGGTGTCAATAATGAAAATACTCTGGAAAATGGAGCAACAACAGATGTAGATGCTGGATTGCTTACTCAAAATGAAACTGTCGATGGAACTTCAGATAGCACGGGTGCCGAAAAGTTCACTGATGATTATCAGCATGAACATGTTACTGGCTTACCTACGTCCAGTGAGTTATCCTGTGTTATCTGTCACGCAGATTTCAGCACAACAAGGGGAATTCTTCCGTGTGGACATCGATTTTGTTTTGGATGCATTCAGAATTGGGCTACTCATAGGATTTCAACGAAGAAAAATGCAACCTGTCCTTTATGCAAGGCAATTTTTCAGTCAATCAAGAAGGTTGAGCAGGCAGATAGAATTGATCAAAAAGTATACACTCAGACAGTCCCATGTGACAATTCAGCTGAAGATGTTTTTATCCTTCCACCTGAAGGATTACCTGATTACACTTTTGAGCCTTCACAGGCAAACTCTTGTGTAGTTTGTGGTGGTGTGGAACCAGAGGATCTCCTTGAAAGTTGTGATATTTGCCGAACTCGAAGAATCCATATCTATTGCCTGGACCCTCCTATAACACCATGGACATGCAGTCCTTGCAACCAACTACGGAGAAGTTATTATGACCGCTCGTATTAA 1236 0.4264 MENVVATVSGYHGSQRFNLIRLISHSGANYVGSMSKSITHLVCWKFEGRKYEIAQKFDIIIVNHRWIEDCIKEGRRVPEESYILQSGYEVGPLLLEVPATRLTKNVVTRDQIYDLDSREQTTEHDKSSAYPSRRSRKGKRSICAGNGVCTVAGPSRKGRRIVNDIVDEVVLDPLFDVVQDDRHSRWDRLNHDAAPTTSLSSGVNNENTLENGATTDVDAGLLTQNETVDGTSDSTGAEKFTDDYQHEHVTGLPTSSELSCVICHADFSTTRGILPCGHRFCFGCIQNWATHRISTKKNATCPLCKAIFQSIKKVEQADRIDQKVYTQTVPCDNSAEDVFILPPEGLPDYTFEPSQANSCVVCGGVEPEDLLESCDICRTRRIHIYCLDPPITPWTCSPCNQLRRSYYDRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181333g00014 411 Gene3D BRCT domain 1 83 IPR036420 -
Stsc181333g00014 411 ProSiteProfiles Zinc finger RING-type profile. 260 305 IPR001841 -
Stsc181333g00014 411 MobiDBLite consensus disorder prediction 117 140 - -
Stsc181333g00014 411 SUPERFAMILY FYVE/PHD zinc finger 346 402 IPR011011 -
Stsc181333g00014 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 339 IPR013083 -
Stsc181333g00014 411 SMART ring_2 260 304 IPR001841 -
Stsc181333g00014 411 Pfam Ring finger domain 259 305 IPR001841 -
Stsc181333g00014 411 Pfam twin BRCT domain 4 66 IPR001357 -
Stsc181333g00014 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 410 IPR013083 -
Stsc181333g00014 411 SUPERFAMILY RING/U-box 244 312 - -
Stsc181333g00014 411 ProSitePatterns Zinc finger RING-type signature. 276 285 IPR017907 -
Stsc181333g00014 411 PANTHER F5A8.9 PROTEIN 223 407 - -
Stsc181333g00014 411 SMART BRCT_7 1 74 IPR001357 -
Stsc181333g00014 411 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Stsc181333g00014 411 MobiDBLite consensus disorder prediction 117 132 - -
Stsc181333g00014 411 SUPERFAMILY BRCT domain 1 85 IPR036420 -
Stsc181333g00014 411 MobiDBLite consensus disorder prediction 192 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181333g00014 Stsc-Chr181333 83603 88126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181333g00014 38 90 Core DNA Replication Machinery Family AT4G02110 53.704 5.85e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181333g00014 - - adu:107471428 666.381