Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181333g00001 ATGAGTCTCAGAATGCAATTTGGTCAGGTTTCAACTGACGAAGAAAGTAAAAGTGCTGCTAATGCATGCCAATTATGTGAAATGCAAAAGCTTTTCTTTTCACCAGTGCCAATTTATTGCTTATGTTGTGGCCTTCGGATCAAGAGAAATAAATACTATTACTACAGAAAAACGGACGAAGTCGTTTCACAACATTGCTTCTGCACTGCATGTCATAATATTTCTCGAGGTGGATCCATCACATACAATGGGATATCTGTTTCCAAGGAACTCCTTGATAAGAAGAGAAATGATGAAGTACTGGAAGAATCATGGGTCCAATGCGATAACTGCAAAGGATGGCAGCATCAAGTATGTGCACTTTATAACAATAAGAGTGATTTGGACTCCAGTGCTGAGTATATATGTCCCAAATGCCGCATAAAGGATATCGAAAATGGATCGCATGTACCCTCACCAAAGTCTGCCATTTATGGTGCTAAGGATTTGCCAAGAACTATGCTTAGTGACCACCTAGAGAAAAGACTTTTCAAGCGTCTATTGCAAGAGAGAGAAGAATGGGAAAAAGAAAAAGGGATTTCAGCTCCTCATGAGGTTCTTGCAGTAGAAAATCTTTCTGTTCGAGTAGTATTATCTGTTGACAAACAATTGAGAGTGAATAAGCAGTTTCTGGACATTTTTCCAGAGGAGAATTATCCTGCCGAGTTCCCCTACAGATTGCAAGAGTTTGGCTTGGATTGTGGCTATCCGAATCAGCGTTCAGTATATATTTCATATCTGGATTCTGTTAAGTATTTTAGGCCGGAAAGAGAGACTGTGACTGGAGAAGCTCTTCGTACCTTTGTTTACCATGAAATATTGATTGGATATCTTGACTATTGCAAGAAACGAGGCTTCACAACTTGCTATATATGGGCCTGTCCTCCTTTGAAGGGGGAAGATTATGTACTGTATTGCCATCCTGATACTCAAAAGACTCCAAAGAATGATAAACTGCGGCGCTGGTATCATTCATTGCTAAGAAAGGCAGCTGAAGAAAGTATTGTTGTTGGTGTAACCAACATATATGAACATTTCTTTCTTCCTGAGGGAAAATTTGACTCCAAGGTGACAGCTGCTCGGTTGCCATACTTTGATGGAGACTTCTGGTCTGGTAATGCTATGGATCTTGCTAGGAAAATTGAGCAAGAGTGTGGAGGAGATTATGAGAAGACCTTGAAGGAACAAGTAACGAAAAGAACCTTAAAGACCATGGGATATGTAAATCCTTCAAAGGGCAGTGCCAAGGACATTTTGGTGATGATAAAGTTGGGCCAAACTATGTTATCTTTCAAGGAAGACTTCATGCTAGTTCACTTGCAATATGAATGCACGCACTGCCATGAAGTGATAGCGTCTGGAAGGCGATGGTTTTGCACTGAATGCAAGAATTTCCAAGAGTGTGAAAGATGCCATAGTACCGAGTCGCACACTTCACCTAGTGGGGAGAAGCATACATTATCTCAGGTCCTCATGGATGATGTGCCTTTTGATACCAAGGAGAACGACACCGTCCTTGATAATGGGTTATTTGAGAATAGGCCTAACTTTCTGATCTTCTGTCAGAAGAATCAGCTTCAGTTTGACACACTCCGCCGTGCCAAGTATTCCTCCATGATGATCCTATATCATCTACGAACTCCTACTATGCCATCAGTTGGCGAAACATGTAACATTTGCTGTAAACACAATCTATCCCAGCACAGCTGGAAATGTGATATTTGCCCAGAGTTCACTGCCTGCTCAGCATGCTATAAAGAGAGAGGTGCTGATTGCCATCCGCACAGGTTGAGTCGAACCTCTTCAACAGCAATGTGTCAGTCAGGGAATCTAGAATTGATGGAAAACTCAGCAATGATTCAGAAACTGCTGAATATTTTACAGCATGCCTCTCGATGTCAGTCGACTAAAACTCAACCTTGCTCTTACCCGAACTGTCGTCAAATTAAAATGATGTTCTATCATGCCAGTAAGTGCACTGTTCGGGTTGCTGGCGGCTGCCGAATATGTAAGAAGGCATGGCTGTTATTAACTCTGCACTCGAGGAATTGTAGAGACTCGCCATGTTTCGTCCCGCGTTGCATGGATCTGAAGAAGCATGCAGAATGGATTGATATGCAATTCGAATCTCGGCGGAGAGCTGCAGTTGTGGAAAGCATCAGAGATCAATGA 2211 0.4206 MSLRMQFGQVSTDEESKSAANACQLCEMQKLFFSPVPIYCLCCGLRIKRNKYYYYRKTDEVVSQHCFCTACHNISRGGSITYNGISVSKELLDKKRNDEVLEESWVQCDNCKGWQHQVCALYNNKSDLDSSAEYICPKCRIKDIENGSHVPSPKSAIYGAKDLPRTMLSDHLEKRLFKRLLQEREEWEKEKGISAPHEVLAVENLSVRVVLSVDKQLRVNKQFLDIFPEENYPAEFPYRLQEFGLDCGYPNQRSVYISYLDSVKYFRPERETVTGEALRTFVYHEILIGYLDYCKKRGFTTCYIWACPPLKGEDYVLYCHPDTQKTPKNDKLRRWYHSLLRKAAEESIVVGVTNIYEHFFLPEGKFDSKVTAARLPYFDGDFWSGNAMDLARKIEQECGGDYEKTLKEQVTKRTLKTMGYVNPSKGSAKDILVMIKLGQTMLSFKEDFMLVHLQYECTHCHEVIASGRRWFCTECKNFQECERCHSTESHTSPSGEKHTLSQVLMDDVPFDTKENDTVLDNGLFENRPNFLIFCQKNQLQFDTLRRAKYSSMMILYHLRTPTMPSVGETCNICCKHNLSQHSWKCDICPEFTACSACYKERGADCHPHRLSRTSSTAMCQSGNLELMENSAMIQKLLNILQHASRCQSTKTQPCSYPNCRQIKMMFYHASKCTVRVAGGCRICKKAWLLLTLHSRNCRDSPCFVPRCMDLKKHAEWIDMQFESRRRAAVVESIRDQ 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181333g00001 736 ProSiteProfiles Zinc finger TAZ-type profile. 626 710 IPR000197 -
Stsc181333g00001 736 Gene3D TAZ domain 625 734 IPR035898 -
Stsc181333g00001 736 Gene3D - 566 616 IPR043145 -
Stsc181333g00001 736 ProSitePatterns Zinc finger PHD-type signature. 66 139 IPR019786 -
Stsc181333g00001 736 SMART PHD_3 67 140 IPR001965 -
Stsc181333g00001 736 Pfam PHD-finger 101 141 IPR019787 -
Stsc181333g00001 736 PANTHER CBP/P300-RELATED 14 455 IPR013178 GO:0004402|GO:0006355|GO:0016573
Stsc181333g00001 736 SMART TAZ_2 627 708 IPR000197 -
Stsc181333g00001 736 Gene3D - 450 501 IPR043145 -
Stsc181333g00001 736 SUPERFAMILY RING/U-box 437 491 - -
Stsc181333g00001 736 SUPERFAMILY FYVE/PHD zinc finger 102 142 IPR011011 -
Stsc181333g00001 736 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 157 563 IPR031162 GO:0004402
Stsc181333g00001 736 SUPERFAMILY TAZ domain 631 714 IPR035898 -
Stsc181333g00001 736 ProSiteProfiles Zinc finger PHD-type profile. 65 142 IPR019787 -
Stsc181333g00001 736 SMART zz_5 564 608 IPR000433 GO:0008270
Stsc181333g00001 736 SMART zz_5 451 494 IPR000433 GO:0008270
Stsc181333g00001 736 Pfam TAZ zinc finger 633 707 IPR000197 -
Stsc181333g00001 736 SUPERFAMILY RING/U-box 547 608 - -
Stsc181333g00001 736 Pfam Histone acetylation protein 240 392 IPR013178 GO:0004402|GO:0006355|GO:0016573
Stsc181333g00001 736 ProSiteProfiles Zinc finger ZZ-type profile. 452 508 IPR000433 GO:0008270
Stsc181333g00001 736 SMART KAT11_2 193 464 IPR013178 GO:0004402|GO:0006355|GO:0016573
Stsc181333g00001 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181333g00001 Stsc-Chr181333 562 6232 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Stsc181333g00001 HAT_KAT11 1.8e-17 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181333g00001 K04498 - aprc:113866525 1068.53