Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181332g00010 ATGCAAGATAATATGAAGAAACAGAAGCAGAAGCAGAAGCAGGTGGTGGTGGTCAATGATAATGAAGAATCTAATAAGAAGAAGGAGCATCGCATTGTGGTGTGGACTCAAGAGGAGGATGATATTCTGAGGGAGCAGGTTGGAATCCATGGAACTCAAAATTGGGGTGTTATTGCTTCTAAATTCAAGGATAAAACTACAAGACAGTGCAGAAGGAGATGGTTCACATACTTGAATTCTGATTTCAAGAAAGGGGGTTGGTCACCAGAGGAAGATATGCTCTTGTGCGAGGCTCAAAAACTATTTGGTAACCGATGGACAGAAATATCGAAGGTGGTTCCAGGCAGAACGGATAATGCTGTTAAGAACCGATTCTCCACATTGCGGAAAAAGAGAGCGAAATATGAAGCATTAGCAAAAGAGAACAGCACTTCTTACACCAATTCAAATAACAAGAGGGTTATTCTACAGCATGGATATGTTACAGATTCAGCATCAGAATCTGGTGTGTCTACTAAGAAGATGAGGAGGTCACATATCCCAGAGGGAGCAGAAAGGATAAGTTATGGAGACAGATCACATAAACAAAACGGAATTCCAATAAGTCAGCAGCCAAGAGCGCCATTCGCCGTGTTACCGCAGAACTCGCATAATGTCAACAACTTGCCAGACCAGCATGACATCTGCAGTATGAAGTTTAATGGTTATGGCCAGAACAAGTTGCAAGGGACATTTCTCAAAAAGGATGATCCAAAGATAAATGCATTGATGCAACAAGCAGAGTTGCTAAGTTCATTAGCTCTAAAAGTTGATGCAGAAAACATGGACCAAAGTCTAGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAAACGAACCAAAGAGTCTGATGTTCCGAGATGTAAGGTTCCGGATCTACAGCTTGTAGATCTAGGTGATTGGTTGGAGGACTTGAAGAGTAACAGTGAGGGAATTCAACCATGTTGGAGGAAATTTAAATCCATTCAAAACACAAAATTCTATGAAGACTATAGTTTCGGATTGTATTCGAGGCAAATGGAGTTATATGAAGACTCTCCTGGCAGTTCTGAATACAGCACAGGATCAACTCTTCTCCCTCATTTGGGTGCTGACAACTCGGAGCACTCGTTGCATCAGGAAATTGAAACTGAACTCAAGGCAATACACATTGGAGATCAAAAGGGATGTGAGCAAGGTGTTCTTTCTAATGCAACTTTGGATCAAGATATATTCACATTTAATAAGGATCGGATGAACAAAGATGGCATTGTTTCTGACTCATCAATGACAGAGTTCAGTTCTCCTCTTCAAGTTACACCTCTGTTCAGATCCTTGGCTGCAGGAATTCCTAGCCCTCAGTTTTCAGAAAGTGAGAGGAACTTCCTCATGAAAACACTTGGAATGGAATCTCCATCTCTCAACACAAGTGCGAACCCCTCGCAACCACCACACTGCAAAAGAGCCCTGCTACAAAGTCTATAA 1503 0.4165 MQDNMKKQKQKQKQVVVVNDNEESNKKKEHRIVVWTQEEDDILREQVGIHGTQNWGVIASKFKDKTTRQCRRRWFTYLNSDFKKGGWSPEEDMLLCEAQKLFGNRWTEISKVVPGRTDNAVKNRFSTLRKKRAKYEALAKENSTSYTNSNNKRVILQHGYVTDSASESGVSTKKMRRSHIPEGAERISYGDRSHKQNGIPISQQPRAPFAVLPQNSHNVNNLPDQHDICSMKFNGYGQNKLQGTFLKKDDPKINALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLKRTKESDVPRCKVPDLQLVDLGDWLEDLKSNSEGIQPCWRKFKSIQNTKFYEDYSFGLYSRQMELYEDSPGSSEYSTGSTLLPHLGADNSEHSLHQEIETELKAIHIGDQKGCEQGVLSNATLDQDIFTFNKDRMNKDGIVSDSSMTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNTSANPSQPPHCKRALLQSL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181332g00010 500 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Stsc181332g00010 500 FunFam Transcription factor MYB124 27 83 - -
Stsc181332g00010 500 SMART sant 31 80 IPR001005 -
Stsc181332g00010 500 SMART sant 83 131 IPR001005 -
Stsc181332g00010 500 CDD SANT 87 128 IPR001005 -
Stsc181332g00010 500 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Stsc181332g00010 500 ProSiteProfiles Myb-like domain profile. 35 78 IPR001005 -
Stsc181332g00010 500 Gene3D - 85 156 - -
Stsc181332g00010 500 CDD SANT 35 78 IPR001005 -
Stsc181332g00010 500 Pfam Myb-like DNA-binding domain 35 95 - -
Stsc181332g00010 500 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 78 IPR017930 -
Stsc181332g00010 500 Gene3D - 21 83 - -
Stsc181332g00010 500 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181332g00010 500 SUPERFAMILY Homeodomain-like 33 125 IPR009057 -
Stsc181332g00010 500 PANTHER MYB PROTEIN-RELATED 35 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181332g00010 Stsc-Chr181332 80348 85912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181332g00010 23 330 MYB Transcription Factor Family AT2G02820 58.974 2.52e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181332g00010 Myb_DNA-bind_6 2.4e-14 CL0123