Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181332g00001 ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACCCCTCACCACCACCATGATGAGCACCACCACCACCAACATCATCCACCCCCTTCCCTCAATTCAATCCTACCAACATGCTCACCCCATGATTATCACGGGGGAGCAACAACAACATTTCTAGGGAAAAGATCCATGTCATTCTCAGGGATTGATCTCGGAGGCGGAGGAGGAGAAGGTAACAACGACAACAATGGCGAAGAAGATTTATCGGATGATGGATCACAGATAGGTGAGAAGAAGAGGAGGCTGAACATGGAGCAAGTGAAGGCCCTCGAGAAGAGCTTCGAGCTAGGGAACAAGCTCGAACCCGAGAGGAAAATGCAGCTTGCAAGGTCCCTTGGATTGCAACCAAGGCAAATTGCGATTTGGTTTCAGAATCGGAGAGCAAGATGGAAGACGAAGCAGTTAGAGAGAGATTATGATCAACTCAAGAGACAGTTTGAAGCCGTTAAATCAGATAATGATGCTCTTCAAGCTCAGAACCAAAAACTTCAAGCTCAGATATTGGCACTGAAAAATAGAGAAGCAACAACAGAGTCAATAAACCTGAACAAAGACACAGAAGGATCATGCAGTAACAGAAGCGAAAACAGTTCAGAGATCAAGTTTGATATTTCAACAAGAACACCAACACCAACAACAACAACAACCATTGTTGATAGTCCTCTATCATCAAAACCATTGTTTCCACCATGTTCATCATCATCCACTAGGCCCCAACAACACCAGCTTCTTCAGATTTCTTCATCAAGGCCTGAAATTGAAATCCATCTTCATCAGTGTCATCAACAGAATAATAATAATAAAGAAGAGAGCTTGAGCAGCATGTTTGTTGGAATGGATGATCAGTCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 927 0.4369 MAFFPANFMLQTPHHHHDEHHHHQHHPPPSLNSILPTCSPHDYHGGATTTFLGKRSMSFSGIDLGGGGGEGNNDNNGEEDLSDDGSQIGEKKRRLNMEQVKALEKSFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLERDYDQLKRQFEAVKSDNDALQAQNQKLQAQILALKNREATTESINLNKDTEGSCSNRSENSSEIKFDISTRTPTPTTTTTIVDSPLSSKPLFPPCSSSSTRPQQHQLLQISSSRPEIEIHLHQCHQQNNNNKEESLSSMFVGMDDQSGFWPWLEQQHFN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181332g00001 308 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Stsc181332g00001 308 FunFam Homeobox-leucine zipper protein ATHB-13 83 150 - -
Stsc181332g00001 308 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Stsc181332g00001 308 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Stsc181332g00001 308 Coils Coil 138 186 - -
Stsc181332g00001 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 76 274 IPR045224 GO:0003700
Stsc181332g00001 308 CDD homeodomain 91 147 IPR001356 GO:0003677
Stsc181332g00001 308 Pfam Homeobox associated leucine zipper 146 186 IPR003106 GO:0006355|GO:0043565
Stsc181332g00001 308 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Stsc181332g00001 308 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Stsc181332g00001 308 MobiDBLite consensus disorder prediction 196 254 - -
Stsc181332g00001 308 SMART HOX_1 89 150 IPR001356 GO:0003677
Stsc181332g00001 308 MobiDBLite consensus disorder prediction 62 94 - -
Stsc181332g00001 308 Gene3D - 83 154 - -
Stsc181332g00001 308 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181332g00001 Stsc-Chr181332 3149 5329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181332g00001 1 308 Homeobox Transcription Factor Family AT1G69780 58.599 2.01e-110 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc181332g00001 Homeodomain 1e-15 CL0123