Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181331g00026 ATGTGTTTGCCTGACGCAGAGAGAGACATGGCTCTCGAAGCTGTGTTCTATTCTAATACTCAACAACCTTCAGATCCTTCTTCTCTTTTCCCTTCTTATGGAATCTTCAACAATAACAAGGACCTTTTCAACTACAACAACAATGAACATGATGATGAACACCAATCCATTATTACTGGACTCGATTACTTACTGTCACCGCCACTTCCACCACCGCCAATACCGCCGCAGTGCTCGGAAGAAACAACAACCATTGATACCACCACTACCACCACTCATCAGACGAACTTGGATAACACATCAAGTTGTAATAATTGTTGTGTGGAGCGTCCCAAGAGAAGGAGAGCAAAGACCAGGAAGAACAAAGAAGAGATCGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGTAACAGAAGGAAGCAAATGAATGATTACCTCTCTCTCCTTCGCTCTCTCATGCCAGATTCTTACGTCCAAAGGGGTGATCAAGCATCCATAATAGGGGGTGCTATTAACTATGTGAAGGTGCTTGAGCAGAAACTGCAGTTTCTTGCTGCTCACAAAGAAATTAGGGATGATGAAGAGGTACTTATTGTTGCTGATGGAGGATCTACTACTGATACAAATAACAGTAGTAATGGCGGCATGCCTTTTTCAGAGTTCTTTGCCTTCCCACAAGTGACAGGGAATGCTGATATTGAGGTAACAATGGTGGAAAGCCATGCAAATCTGAAAATAAGGTCGAAGAAGAAGCCCAAACAGCTCTTGAAGATGGTGTCTAATTTGCAAGCCATGAGGCTCACAATCTTGCACCTTAATGTCACCACCACCAACGATGTTGTCCTCTATTCTCTCAGCGTCAAGGTGGAAGATGATTGCAAGTTGGGATCAGTGGATGAGATAGCCACAGCTGTGTGCCAAATGATGGAAAACATTCAACAGGAGTCAATGTTGATCAATTAA 966 0.4337 MCLPDAERDMALEAVFYSNTQQPSDPSSLFPSYGIFNNNKDLFNYNNNEHDDEHQSIITGLDYLLSPPLPPPPIPPQCSEETTTIDTTTTTTHQTNLDNTSSCNNCCVERPKRRRAKTRKNKEEIENQRMTHIAVERNRRKQMNDYLSLLRSLMPDSYVQRGDQASIIGGAINYVKVLEQKLQFLAAHKEIRDDEEVLIVADGGSTTDTNNSSNGGMPFSEFFAFPQVTGNADIEVTMVESHANLKIRSKKKPKQLLKMVSNLQAMRLTILHLNVTTTNDVVLYSLSVKVEDDCKLGSVDEIATAVCQMMENIQQESMLIN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181331g00026 321 SMART finulus 133 184 IPR011598 GO:0046983
Stsc181331g00026 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Stsc181331g00026 321 Pfam Helix-loop-helix DNA-binding domain 128 178 IPR011598 GO:0046983
Stsc181331g00026 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 190 IPR036638 GO:0046983
Stsc181331g00026 321 Gene3D - 112 194 IPR036638 GO:0046983
Stsc181331g00026 321 PANTHER MAX DIMERIZATION, MAD 73 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181331g00026 Stsc-Chr181331 122601 124364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181331g00026 118 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 60.656 8.24e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181331g00026 HLH 9.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181331g00026 - - aip:107645875 404.831