Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181331g00017 ATGGATCATCAAGGGCATGGCCAAAACCCATCCATGGGGGTTGTGAGTAGCGGGGCTCAACTAACGTATGGTTCCAATCCCTACCAGCCAAACCAAATGACTGGGGCGCCCGGATCTGTTGTTACATCAGTTGGGAACATGCAAGCCACTGGTCAACCTGCTGGAGCTCAACTGGGACAACATCAACTTGCTTATCAGCACATTCATCAGCAGCAGCAGCAGCAACTTCAGCAACAACTCCAGGCTTTTTGGGCAAATCAGTACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGTCTCCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTCGAATGATATCGGCTGAGGCACCAGTCATATTTGCTAGGGCATGCGAAATGTTCATTTTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGAAGAACCCTTCAGAAAAATGATATTGCTGCTGCAATCACAAGGACTGATATCTTTGATTTCCTGGTTGATATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCGGCTGATGCAATGCCTTACTGTTATATGCCGCCTCAGCATGCACCTCAAGTTGGGCCCGCCGGAGTCATAATGGGTAAGCCTGTGATGGACCCAAATATGTACGCTCAACAGTCTCATCCCTACATGGCACCACAAATGTGGCCGCAGCCACCAGACCAACGACAATCATCTCCGGATCATTAG 783 0.4802 MDHQGHGQNPSMGVVSSGAQLTYGSNPYQPNQMTGAPGSVVTSVGNMQATGQPAGAQLGQHQLAYQHIHQQQQQQLQQQLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADAMPYCYMPPQHAPQVGPAGVIMGKPVMDPNMYAQQSHPYMAPQMWPQPPDQRQSSPDH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181331g00017 260 MobiDBLite consensus disorder prediction 1 37 - -
Stsc181331g00017 260 Gene3D Histone, subunit A 63 179 IPR009072 GO:0046982
Stsc181331g00017 260 Pfam Core histone H2A/H2B/H3/H4 67 164 IPR007125 GO:0003677
Stsc181331g00017 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 200 - -
Stsc181331g00017 260 MobiDBLite consensus disorder prediction 9 37 - -
Stsc181331g00017 260 FunFam Nuclear transcription factor Y subunit gamma 66 179 - -
Stsc181331g00017 260 SUPERFAMILY Histone-fold 68 173 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181331g00017 Stsc-Chr181331 69042 71549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181331g00017 1 247 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.903 8.68e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc181331g00017 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181331g00017 K08066 - gmx:100527803 426.787