Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181331g00005 ATGCAAGATATTTTCGGATCAGTTCGCCGATCGCTGGTGTTCCGTCCTTCGCCTGAGAACGAAGACCACTCGCTCGGAGGAACCCTAGTTGATAAGATCGGCTACTGTATACGCAATTCTAGAGTCTTCTCGAAGCCCTCACTGTCGTCGCCGTCCTTGCCGGCGGTTCCCAAGGACGCTGCTGCTTCTGCTGCTCCGCCGCCGCCGCCTACGATCCGATGGCGCAAGGGCGAGTTGATCGGTTGTGGCGCGTTTGGCCAAGTTTACGTTGGAATGAATCTCGATTCTGGAGAGCTTTTAGCAGTTAAACAGGTTTTGATTGCAGCGAGTAGTGCTTCCAAGGAGAAGGCACAGGCTCACGTAAAAGAGCTCGAGGAAGAAGTTAAGCTTCTTAAAGATCTTTCACATCCCAACATTGTTAGATATTTGGGTACAGTTAGAGAGGAGGACACCTTAAATATTCTCCTGGAGTTTGTCCCTGGTGGATCCATATCATCACTGTTGGGGAAATTTGGAGCTTTCCCTGAGGCAGTCATAAGAACTTACACAAAGCAGCTGCTGCTTGGACTTGAGTACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTTGTAGATAATAAAGGTTGCATAAAACTCGCAGATTTTGGGGCATCCAAACAAGTTGTCGAGCTGGCTACTATTTCGGGTGCCAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAGGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGACATATGGAGTGTGGGTTGCACTGTGATTGAGATGGCCACTGGAAAGCCTCCCTGGAGCCAACAATACCAACAAGAGGTCGCTGCTCTCTTCCATATAGGGACGACTAAGTCTCATCCGCCAATCCCTGATCATCTCTCTGCTGGAGCCAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGTGTTTGAGGCCATCAGCATCAGAACTACTGCAGCATCCCTTTGTTACTGGTGAACCTATGGATTCTCTTCCTAAACCATCTACTGCCGTCGAAAATTTTGAAGCTTCATCATCTTGTGCTCCAAATGTTGAATCCTTCCTTCGTTGCTCAAATGTGAATCTTCGGGACTCGGGAAATAATGAGTTGTGGGGACTTAGAAACGATGATGACGACATGTGTATGATTGATGACAACGAGGAGTTCTCTCAGAATGATGTCAAACACGAACCTTTGATCTCAGAAAATATTGAGAGTTTCAACCCGATGTCAGATCCCTCTGATGATTGGGTGTGTAAGTTTGATGGAAGTCCGGAATTGGAACATAAAGGAGTCAGTTTTGGCACAGATGAAAATGATGCGCCACTTGGTCACTTAGGGACTTATAACAAGGAGCAGACAGATTTTTCCTTTCCCAGCGTGCCATCTCTATCAGAGGAAGATGATGAGCTCACTGAGTCAAAAATTCAAGCTTTTTTGGATGAGAAGGCTCTTGAACTGAAGAAGCTGCAAACACCTTTATATGAAGAGTTCTACAATAGTTTAAATACATCTTCTTGTTCAGCAAGTATGATTGATGGTACAAGTGATGATACTGCTTCTCGGAAGTTTTTGAAGTTACCTCCTAAGAGTAGGTCTCCAAGTCGGGCACCAAGCACTCCATCTAAAGCAATTGATAATACCGGAAGTCCTGGAAGTAATGGCAGGTCCCCGTCAACTGTTGGCAATGCAAATGATCATAGTTCACAGGACCTTCCATCTTCTCCCCTCAGTGAATTTAAAGTGCTGAAAGTTGACTCCCAGAAGGAACCCGGTAGCCCAAGTTTAAGCTTTTCTGAGAGACAGAGAAAGTGGAAAGAAGAGCTCGATCAGGAGCTTGAAAGAAAACGAGAAATGATGCGCCAAGCAGGGGNNNNNNNNNNTAGAGCTTTACATCGGCAGAGAGAGCGAACACGATTTGCTTCTCCCAGCAAATAA 1980 0.4561 MQDIFGSVRRSLVFRPSPENEDHSLGGTLVDKIGYCIRNSRVFSKPSLSSPSLPAVPKDAAASAAPPPPPTIRWRKGELIGCGAFGQVYVGMNLDSGELLAVKQVLIAASSASKEKAQAHVKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAGAKDFLLKCLQKEPCLRPSASELLQHPFVTGEPMDSLPKPSTAVENFEASSSCAPNVESFLRCSNVNLRDSGNNELWGLRNDDDDMCMIDDNEEFSQNDVKHEPLISENIESFNPMSDPSDDWVCKFDGSPELEHKGVSFGTDENDAPLGHLGTYNKEQTDFSFPSVPSLSEEDDELTESKIQAFLDEKALELKKLQTPLYEEFYNSLNTSSCSASMIDGTSDDTASRKFLKLPPKSRSPSRAPSTPSKAIDNTGSPGSNGRSPSTVGNANDHSSQDLPSSPLSEFKVLKVDSQKEPGSPSLSFSERQRKWKEELDQELERKREMMRQAGXXXXRALHRQRERTRFASPSK 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181331g00005 659 Pfam Protein kinase domain 75 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181331g00005 659 ProSiteProfiles Protein kinase domain profile. 74 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181331g00005 659 FunFam Mitogen-activated protein kinase kinase kinase 2 73 366 - -
Stsc181331g00005 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Stsc181331g00005 659 Coils Coil 616 638 - -
Stsc181331g00005 659 SMART serkin_6 74 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181331g00005 659 FunFam Serine/threonine-protein kinase STE11 70 164 - -
Stsc181331g00005 659 MobiDBLite consensus disorder prediction 520 639 - -
Stsc181331g00005 659 MobiDBLite consensus disorder prediction 443 483 - -
Stsc181331g00005 659 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Stsc181331g00005 659 CDD STKc_MAPKKK 73 337 - -
Stsc181331g00005 659 Gene3D Transferase(Phosphotransferase) domain 1 73 365 - -
Stsc181331g00005 659 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 61 349 - -
Stsc181331g00005 659 Coils Coil 107 134 - -
Stsc181331g00005 659 MobiDBLite consensus disorder prediction 550 590 - -
Stsc181331g00005 659 SUPERFAMILY Protein kinase-like (PK-like) 73 338 IPR011009 -
Stsc181331g00005 659 MobiDBLite consensus disorder prediction 614 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181331g00005 Stsc-Chr181331 25728 30136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181331g00005 1 659 MAP Kinase Kinase Kinase AT1G54960 56.056 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc181331g00005 Pkinase 7.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181331g00005 K20606 - gmx:100807537 974.156