Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181330g00013 ATGGCAGCACAAGTTTCGGATGCTTGTCTTTCTAAATCCTCAAGCAACTCTGGTGGCACCTCTGAAGGGAGTGATAACACCAACAATACTGGGGACAATGATTTGGCAACTAAATTGGCAGATCAAGCCTCCAATTCCGATGATAATTCGCGAATCTTGAACTTTGTGAAGCTCGCCAATGATGACTCATCGATTCGTTGTTCTTCTAAGGTGCAAGAGCACGACTTCTTTAACTCAGAAAAGAGGGTGATGGAAGAGTCATCGTCTTCCGAAAAAAAAGAAAAAAACACAGAAGAGGACACTTCAGAGTCGAGAAATTTCTCTTGTAGCTTCTGCAAGAGAAATTTCTCATCTTCTCAAGCCTTAGGAGGGCACCAAAACGCACATAAGCAAGAGCGCGCAATAGCAAAACGTCGCCAAGAGATCAGCGCAAGCTCTTACGGCCCCCCTCACTTTCCTTATTACCCTTACCCTAGTTTCTCCCCTCATCCTTTATATAATAATAATAATAGGGCACTTGGGGTAAGGATGGAGTCCATGATTACCAAACCTAATTCTTATTCTTGGCCTAACCTTAGGTTTGGTCAAAACCATAATTGGTCAAGGACAGGGATGCTTGATAGGTTAAACATTGAGGGATTGAATCCCAATAATGGAGGAGGTTCTTCAAAATTGAATTTGAGGATAGAAGATGAGAATGGTGGTAATAGAATTATTCCCCAATTAGGAGTTTCTTCTACAAAAGTTGCTGCTAGTTCTAATTCAGCTATCAATGACAAGCCAACAAAGGTTAATACCCATGATGGTGATCCAACAAAGCCAGATGAACTCTCCACTACTAAGTCTCCATGCCTTGATTTGTCACTTAAGCTTTAA 876 0.4155 MAAQVSDACLSKSSSNSGGTSEGSDNTNNTGDNDLATKLADQASNSDDNSRILNFVKLANDDSSIRCSSKVQEHDFFNSEKRVMEESSSSEKKEKNTEEDTSESRNFSCSFCKRNFSSSQALGGHQNAHKQERAIAKRRQEISASSYGPPHFPYYPYPSFSPHPLYNNNNRALGVRMESMITKPNSYSWPNLRFGQNHNWSRTGMLDRLNIEGLNPNNGGGSSKLNLRIEDENGGNRIIPQLGVSSTKVAASSNSAINDKPTKVNTHDGDPTKPDELSTTKSPCLDLSLKL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181330g00013 291 MobiDBLite consensus disorder prediction 120 139 - -
Stsc181330g00013 291 MobiDBLite consensus disorder prediction 1 49 - -
Stsc181330g00013 291 MobiDBLite consensus disorder prediction 76 104 - -
Stsc181330g00013 291 SUPERFAMILY beta-beta-alpha zinc fingers 104 134 IPR036236 -
Stsc181330g00013 291 MobiDBLite consensus disorder prediction 7 49 - -
Stsc181330g00013 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Stsc181330g00013 291 Gene3D Classic Zinc Finger 84 148 - -
Stsc181330g00013 291 MobiDBLite consensus disorder prediction 76 102 - -
Stsc181330g00013 291 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 291 IPR044246 GO:0009788
Stsc181330g00013 291 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Stsc181330g00013 291 MobiDBLite consensus disorder prediction 250 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181330g00013 Stsc-Chr181330 73848 74723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181330g00013 101 214 C2H2 Transcription Factor Family AT5G10970 43.966 2.46e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181330g00013 - - adu:107474629 302.367