Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181330g00006 | ATGGAGAAAATCGCACTAACAACAACTCCTCATAACTGTTTCTTCTCTTCTACACTTCCAAAGACTTCTTCTTTCCCTTCTCCATTCGCCTCTAACCACCTCCATGCTCTTCCCTTATCTTCTTCTGCGCTCACCAATCACCGCCTCAGACTTGTTTCTAGAAACTCCGCTTCTTGCAGGACCGTCAAATGCTCCGTTTCCGAAGCCGCTGAACCCTTAACTGCTTCGGAGAAGAGGCAATTGAAAAGAAGAGCTGATGTCAGGAACATAGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTAGTTGATGCCATGCTGAAACAGACAAAGGTGTTTCGTGATAATCAATTCGTGCAGGAAAGGATAATGGACTCAAATGATTTAGAGCGTGAGAGAGGAATCACAATATTGAGTAAAAATACATCTGTCACCTATCATGACACAAAGATTAATATAATAGATACTCCCGGTCACTCTGATTTTGGAGGTGAAGTGGAGCGTATCCTGAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAGAAAGCATTAGAGTTTGGTCATTCGGTTGTCGTGGTTGTTAATAAGATAGACAGGCCATCTGCTCGCCCAGATTTTGTTGTCAATTCTACTTTTGAACTCTTCATTGAATTAAATGCAACAGATGAGCAGTGTGACTTTCAAGTAATATATGCAAGTGGAATAAAAGGACAAGCAGGATTATCTCCTGAGAATCTGGCAGAAGACCTTGGGCCATTGTTTGAGTCCATTATCAGATGCATCCCAGGACCAAAGATTGATAAAGATGGCGCTCTTCAAATGCTTGTCACAAATATTGAGTATGATGAACACAAAGGGCGTATAGCAATTGGGCGCTTGCAAGCTGGAGTTTTAGAAAAAGGCATGGATGTCAAGGTGTGCACCTCAGAAGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTACGTGTACGACAAATTCAGCAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTGGTGATATTCAGATTGGAGAGACAATTGCTTGTAAAGTATCTGGAAAGCCACTGCCTTCCATAAAGGTGGAGGAACCAACTGTGAAAATGGCTTTCTCCATAAACATTTCACCTTTTGTCGGCCGCGAGGGAAAGTATGTTACCAGTAGGAACTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTTGCCATGAAAGTTGAAGATGGTGAGACAGCAGATACATTCATTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATTGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGCCCTCCTAAAGTTATCAACAAGAAAGTGAACGACAAATTGCTAGAACCGTACGAGATTGCTACTGTTGAGGTACCTGAAGAACACATGGGAGCTGTTGTTGAACTTCTTGGGAAGAGACGAGGGCAGATGTTTGATATGCAAGGAGTTGGAGCGGAGGGAACTACACTACTCAAATACAAGATCCCAACTCGTGGCCTTCTTGGATTACGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAATACTATCTTTGATAGTTATGGACCTTGGGCTGGTGACATGAGTACCCGCGACCAAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTTCGTCTTATGCAATCGCTAGTTCGCAAGAGAGGGGACAGATGTTTATTGGTCCCGGAGTGGATGTTTACAAAGGTCAAATTGTTGGCATCCATCAGCGGCCCGGGGACTTGTCCTTGAATGTTTGCAAGAAAAAAGCTGCGACAAACATACGTTCCAACAAGGAACAAACAGATGGTGCTGCCAAGGGTAGTCAAGGAAAGGCTGTGGTGGTAGCATTAGAGATAACCATCGCAGATGGATTGCATGTTTCAAAGCAAATATGGGAATCTGCACAGCCTTTAGAGAATGAGATTTTATACCTCTGA | 2040 | 0.4324 | MEKIALTTTPHNCFFSSTLPKTSSFPSPFASNHLHALPLSSSALTNHRLRLVSRNSASCRTVKCSVSEAAEPLTASEKRQLKRRADVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYHDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPKIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGMDVKVCTSEDSCRYGRVSELYVYDKFSRVPAESVEAGDICAVCGIGDIQIGETIACKVSGKPLPSIKVEEPTVKMAFSINISPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGAEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDMSTRDQGSLVAFEDGTSSSYAIASSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTDGAAKGSQGKAVVVALEITIADGLHVSKQIWESAQPLENEILYL | 679 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181330g00006 | 679 | FunFam | GTP-binding protein TypA | 281 | 381 | - | - | |
Stsc181330g00006 | 679 | Pfam | Elongation factor Tu GTP binding domain | 86 | 277 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | FunFam | GTP-binding protein TypA | 388 | 493 | - | - | |
Stsc181330g00006 | 679 | SUPERFAMILY | EF-G C-terminal domain-like | 480 | 595 | IPR035647 | - | |
Stsc181330g00006 | 679 | Pfam | Elongation factor G C-terminus | 478 | 562 | IPR000640 | - | |
Stsc181330g00006 | 679 | PRINTS | GTP-binding elongation factor signature | 133 | 141 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | PRINTS | GTP-binding elongation factor signature | 153 | 163 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | PRINTS | GTP-binding elongation factor signature | 89 | 102 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | PRINTS | GTP-binding elongation factor signature | 205 | 214 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | FunFam | GTP-binding protein TypA | 84 | 280 | - | - | |
Stsc181330g00006 | 679 | FunFam | GTP-binding protein TypA | 471 | 564 | - | - | |
Stsc181330g00006 | 679 | Gene3D | - | 471 | 564 | - | - | |
Stsc181330g00006 | 679 | NCBIfam | small GTP-binding protein domain | 88 | 236 | IPR005225 | GO:0005525 | |
Stsc181330g00006 | 679 | Gene3D | Translation factors | 281 | 381 | - | - | |
Stsc181330g00006 | 679 | SUPERFAMILY | EF-G C-terminal domain-like | 385 | 469 | IPR035647 | - | |
Stsc181330g00006 | 679 | CDD | BipA_TypA_C | 480 | 559 | IPR035651 | - | |
Stsc181330g00006 | 679 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 126 | 141 | IPR031157 | - | |
Stsc181330g00006 | 679 | CDD | TypA_BipA | 86 | 279 | IPR047041 | - | |
Stsc181330g00006 | 679 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 388 | 470 | - | - | |
Stsc181330g00006 | 679 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 85 | 280 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | Gene3D | - | 85 | 280 | IPR027417 | - | |
Stsc181330g00006 | 679 | CDD | BipA_TypA_II | 287 | 380 | IPR047042 | - | |
Stsc181330g00006 | 679 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 82 | 255 | - | - | |
Stsc181330g00006 | 679 | SUPERFAMILY | Translation proteins | 233 | 373 | IPR009000 | - | |
Stsc181330g00006 | 679 | Pfam | Elongation factor Tu domain 2 | 301 | 370 | IPR004161 | GO:0005525 | |
Stsc181330g00006 | 679 | CDD | BipA_III | 387 | 465 | IPR047043 | - | |
Stsc181330g00006 | 679 | SMART | EFG_C_a | 477 | 566 | IPR000640 | - | |
Stsc181330g00006 | 679 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 79 | 288 | IPR027417 | - | |
Stsc181330g00006 | 679 | NCBIfam | translational GTPase TypA/BipA | 87 | 633 | IPR006298 | GO:0003924|GO:0005525 | |
Stsc181330g00006 | 679 | Gene3D | bipa protein | 565 | 634 | IPR042116 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181330g00006 | Stsc-Chr181330 | 24993 | 32071 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181330g00006 | 87 | 214 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 43.846 | 3.96e-23 | 103 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181330g00006 | K06207 | - | gmx:100785222 | 1098.96 |