Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181330g00006 ATGGAGAAAATCGCACTAACAACAACTCCTCATAACTGTTTCTTCTCTTCTACACTTCCAAAGACTTCTTCTTTCCCTTCTCCATTCGCCTCTAACCACCTCCATGCTCTTCCCTTATCTTCTTCTGCGCTCACCAATCACCGCCTCAGACTTGTTTCTAGAAACTCCGCTTCTTGCAGGACCGTCAAATGCTCCGTTTCCGAAGCCGCTGAACCCTTAACTGCTTCGGAGAAGAGGCAATTGAAAAGAAGAGCTGATGTCAGGAACATAGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTAGTTGATGCCATGCTGAAACAGACAAAGGTGTTTCGTGATAATCAATTCGTGCAGGAAAGGATAATGGACTCAAATGATTTAGAGCGTGAGAGAGGAATCACAATATTGAGTAAAAATACATCTGTCACCTATCATGACACAAAGATTAATATAATAGATACTCCCGGTCACTCTGATTTTGGAGGTGAAGTGGAGCGTATCCTGAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAGAAAGCATTAGAGTTTGGTCATTCGGTTGTCGTGGTTGTTAATAAGATAGACAGGCCATCTGCTCGCCCAGATTTTGTTGTCAATTCTACTTTTGAACTCTTCATTGAATTAAATGCAACAGATGAGCAGTGTGACTTTCAAGTAATATATGCAAGTGGAATAAAAGGACAAGCAGGATTATCTCCTGAGAATCTGGCAGAAGACCTTGGGCCATTGTTTGAGTCCATTATCAGATGCATCCCAGGACCAAAGATTGATAAAGATGGCGCTCTTCAAATGCTTGTCACAAATATTGAGTATGATGAACACAAAGGGCGTATAGCAATTGGGCGCTTGCAAGCTGGAGTTTTAGAAAAAGGCATGGATGTCAAGGTGTGCACCTCAGAAGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTACGTGTACGACAAATTCAGCAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTGGTGATATTCAGATTGGAGAGACAATTGCTTGTAAAGTATCTGGAAAGCCACTGCCTTCCATAAAGGTGGAGGAACCAACTGTGAAAATGGCTTTCTCCATAAACATTTCACCTTTTGTCGGCCGCGAGGGAAAGTATGTTACCAGTAGGAACTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTTGCCATGAAAGTTGAAGATGGTGAGACAGCAGATACATTCATTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATTGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGCCCTCCTAAAGTTATCAACAAGAAAGTGAACGACAAATTGCTAGAACCGTACGAGATTGCTACTGTTGAGGTACCTGAAGAACACATGGGAGCTGTTGTTGAACTTCTTGGGAAGAGACGAGGGCAGATGTTTGATATGCAAGGAGTTGGAGCGGAGGGAACTACACTACTCAAATACAAGATCCCAACTCGTGGCCTTCTTGGATTACGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAATACTATCTTTGATAGTTATGGACCTTGGGCTGGTGACATGAGTACCCGCGACCAAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTTCGTCTTATGCAATCGCTAGTTCGCAAGAGAGGGGACAGATGTTTATTGGTCCCGGAGTGGATGTTTACAAAGGTCAAATTGTTGGCATCCATCAGCGGCCCGGGGACTTGTCCTTGAATGTTTGCAAGAAAAAAGCTGCGACAAACATACGTTCCAACAAGGAACAAACAGATGGTGCTGCCAAGGGTAGTCAAGGAAAGGCTGTGGTGGTAGCATTAGAGATAACCATCGCAGATGGATTGCATGTTTCAAAGCAAATATGGGAATCTGCACAGCCTTTAGAGAATGAGATTTTATACCTCTGA 2040 0.4324 MEKIALTTTPHNCFFSSTLPKTSSFPSPFASNHLHALPLSSSALTNHRLRLVSRNSASCRTVKCSVSEAAEPLTASEKRQLKRRADVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYHDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPKIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGMDVKVCTSEDSCRYGRVSELYVYDKFSRVPAESVEAGDICAVCGIGDIQIGETIACKVSGKPLPSIKVEEPTVKMAFSINISPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGAEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDMSTRDQGSLVAFEDGTSSSYAIASSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTDGAAKGSQGKAVVVALEITIADGLHVSKQIWESAQPLENEILYL 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181330g00006 679 FunFam GTP-binding protein TypA 281 381 - -
Stsc181330g00006 679 Pfam Elongation factor Tu GTP binding domain 86 277 IPR000795 GO:0003924|GO:0005525
Stsc181330g00006 679 FunFam GTP-binding protein TypA 388 493 - -
Stsc181330g00006 679 SUPERFAMILY EF-G C-terminal domain-like 480 595 IPR035647 -
Stsc181330g00006 679 Pfam Elongation factor G C-terminus 478 562 IPR000640 -
Stsc181330g00006 679 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Stsc181330g00006 679 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Stsc181330g00006 679 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Stsc181330g00006 679 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Stsc181330g00006 679 FunFam GTP-binding protein TypA 84 280 - -
Stsc181330g00006 679 FunFam GTP-binding protein TypA 471 564 - -
Stsc181330g00006 679 Gene3D - 471 564 - -
Stsc181330g00006 679 NCBIfam small GTP-binding protein domain 88 236 IPR005225 GO:0005525
Stsc181330g00006 679 Gene3D Translation factors 281 381 - -
Stsc181330g00006 679 SUPERFAMILY EF-G C-terminal domain-like 385 469 IPR035647 -
Stsc181330g00006 679 CDD BipA_TypA_C 480 559 IPR035651 -
Stsc181330g00006 679 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Stsc181330g00006 679 CDD TypA_BipA 86 279 IPR047041 -
Stsc181330g00006 679 Gene3D Elongation Factor G (Translational Gtpase), domain 3 388 470 - -
Stsc181330g00006 679 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 280 IPR000795 GO:0003924|GO:0005525
Stsc181330g00006 679 Gene3D - 85 280 IPR027417 -
Stsc181330g00006 679 CDD BipA_TypA_II 287 380 IPR047042 -
Stsc181330g00006 679 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 82 255 - -
Stsc181330g00006 679 SUPERFAMILY Translation proteins 233 373 IPR009000 -
Stsc181330g00006 679 Pfam Elongation factor Tu domain 2 301 370 IPR004161 GO:0005525
Stsc181330g00006 679 CDD BipA_III 387 465 IPR047043 -
Stsc181330g00006 679 SMART EFG_C_a 477 566 IPR000640 -
Stsc181330g00006 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 288 IPR027417 -
Stsc181330g00006 679 NCBIfam translational GTPase TypA/BipA 87 633 IPR006298 GO:0003924|GO:0005525
Stsc181330g00006 679 Gene3D bipa protein 565 634 IPR042116 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181330g00006 Stsc-Chr181330 24993 32071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181330g00006 87 214 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 3.96e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181330g00006 K06207 - gmx:100785222 1098.96