Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181328g00017 ATGGAAGCACATAGCTCTAACAATGCACAGGTTATTGAAGTCAGTGGAGATCAGGAGGAAAGAAGGAATCCAGGAGGAAGTAAGATCTGTAGTGAAGCGCCATGTGGTTTCGCAGATGCAGGATCCATCTCTAAAGATTCTGAGGAGCGATCAACTTCCATGCGAAAGCTTTTGATAGCAGTGGTCCTTTGCTTTATTTTCATGACTGTTGAAGTAATTGGAGGGATCAAAGCTAACAGTCTTGCAATATTAACAGATGCAGCACATTTGCTTTCAGATGTTGCAGCGTTTGCCATCTCCTTATTTTCGTTATGGGCTGCTGGATGGGAAGCTACCCCCCGCCAGTCCTATGGATTCTTTAGAATAGAGATTCTTGGGGCATTGGTTTCCATCCAAATGATATGGTTGCTTGCTGGAATTCTGGTATATGAAGCAATTGACAGAATGGTAGCAGGACCTCGTGAAGTGAATGGCTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTAGTGGTTAACATCATCATGGCTCTGCTACTGGGCCACGATCATGGACATGGACATGGACATGGACATGGGCATGGACATGGGCATGGGCACGGACACGGACACGATCATGGTCATGATCATCATGGCCATAGCCATGGATTCACCGGGTCTACACATGATCATCATCCCCACCATCATCATACAAAAGACGAGCATCATCATGCTCATGATGATCACACACACCATGGTCATGAAGAGCCACCAAAAGAGGGACACCATGAGCATAATCATGACTTTCAACCACTTCTTGGGGAACCTCAACCTGAGAAGAAGCGATGGAACATAAATGTACAGGGGGCTTATCTCCATGTACTTGGGGACTCTATCCAAAGCGTTGGTGTAATGATCGGCGGAGCGATCATCTGGTATAAGCCTGAGTGGCAAATAGTTGATTTGATATGTACCCTGATATTTTCGGTAATTGTTCTAGGGACAACTATCAACATGCTTCGAAACATATTGGAGGTCCTGATGGAGAGCACACCGCGTGAGATCGATGCTACTAAGCTAGAAAGAGGGCTGCTGGAGATGGAAGAAGTAGTGGCTGTTCATGAGCTGCATATATGGGCCATAACCGTCGGTAAGATCTTACTAGCTTGCCATGTTAAAGTCAGACCCGATGCAGATGCAGACATGGTTCTAGACAAGGTTATAGACTACATCAAAAGGGTTCATAACATCAGCCATGTAACAATCCAGATAGAGCGCTAG 1257 0.4519 MEAHSSNNAQVIEVSGDQEERRNPGGSKICSEAPCGFADAGSISKDSEERSTSMRKLLIAVVLCFIFMTVEVIGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIDRMVAGPREVNGFLMFLVSAFGLVVNIIMALLLGHDHGHGHGHGHGHGHGHGHGHGHDHGHDHHGHSHGFTGSTHDHHPHHHHTKDEHHHAHDDHTHHGHEEPPKEGHHEHNHDFQPLLGEPQPEKKRWNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWQIVDLICTLIFSVIVLGTTINMLRNILEVLMESTPREIDATKLERGLLEMEEVVAVHELHIWAITVGKILLACHVKVRPDADADMVLDKVIDYIKRVHNISHVTIQIER 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181328g00017 418 MobiDBLite consensus disorder prediction 233 262 - -
Stsc181328g00017 418 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 8 418 - -
Stsc181328g00017 418 Gene3D Cation efflux protein transmembrane domain 53 339 IPR027469 -
Stsc181328g00017 418 NCBIfam cation diffusion facilitator family transporter 54 418 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc181328g00017 418 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 346 417 IPR036837 -
Stsc181328g00017 418 MobiDBLite consensus disorder prediction 186 208 - -
Stsc181328g00017 418 Pfam Cation efflux family 57 340 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc181328g00017 418 MobiDBLite consensus disorder prediction 185 270 - -
Stsc181328g00017 418 MobiDBLite consensus disorder prediction 1 30 - -
Stsc181328g00017 418 SUPERFAMILY Cation efflux protein transmembrane domain-like 51 341 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181328g00017 Stsc-Chr181328 103221 106523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181328g00017 1 418 Inorganic Solute Cotransporters AT2G46800 67.780 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181328g00017 K14689 - gmx:100794876 565.074