Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181328g00016 ATGGCTCTCAAAGAACTGTTTTCTAAGAGCTCAAAGAGCTCAACAGCTGATGGAGAGCCACAACATATTCAAAGAAAACTAAAACCACACATAGAGCACCAAGAATTCTCAGAACCAAGACACTCTCAAATCCTGCCTGGGTTTCTCTCTTCCTTTGCATGGAACAGAGGTGGATTGCAAAAGCCTGAGCTAAAATCGTTTCTTGATTCCAAGATGGAAGCACATAGCTCTAACAATGCACAGGTTATTGAAGTCAGTGGAGATCAGGAGGAAAGAAGGAATCCAGGAGGAAGTAAGATCTGTAGTGAAGCGCCATGTGGTTTCGCAGATGCAGGATCCATCTCTAAAGATTCTGAGGAGCGATCAACTTCCATGCGAAAGCTTTTGATAGCAGTGGTCCTTTGCTTTATTTTCATGACTGTTGAAGTAATTGGAGGGATCAAAGCTAACAGTCTTGCAATATTAACAGATGCAGCACATTTGCTTTCAGATGTTGCAGCGTTTGCCATCTCCTTATTTTCGTTATGGGCTGCTGGATGGGAAGCTACCCCCCGCCAGTCCTATGGATTCTTTAGAATAGAGATTCTTGGGGCATTGGTTTCCATCCAAATGATATGGTTGCTTGCTGGAATTCTGGTATATGAAGCAATTGACAGAATGGTAGCAGGACCTCGTGAAGTGAATGGCTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTAGTGGTTAACATCATCATGGCTCTGCTACTGGGCCACGATCATGGACATGGACATGGACATGGACATGGGCATGGACATGGGCATGGGCACGGACACGGACACGATCATGGTCATGATCATCATGGCCATAGCCATGGATTCACCGGGTCTACACATGATCATCATCCCCACCATCATCATACAAAAGACGAGCATCATCATGCTCATGATGATCACACACACCATGGTCATGAAGAGCCACCAAAAGAGGGACACCATGAGCATAATCATGACTTTCAACCACTTCTTGGGGAACCTCAACCTGAGAAGAAGCGATGGAACATAAATGTACAGGGGGCTTATCTCCATGTACTTGGGGACTCTATCCAAAGCGTTGGTGTAATGATCGGCGGAGCGATCATCTGGTATAAGCCTGAGTGGCAAATAGTTGATTTGATATGTACCCTGATATTTTCGGTAATTGTTCTAGGGACAACTATCAACATGCTTCGAAACATATTGGAGGTCCTGATGGAGAGCACACCGCGTGAGATCGATGCTACTAAGCTAGAAAGAGGGCTGCTGGAGATGGAAGAAGTAGTGGCTGTTCATGAGCTGCATATATGGGCCATAACCGTCGGTAAGATCTTACTAGCTTGCCATGTTAAAGTCAGACCCGATGCAGATGCAGACATGGTTCTAGACAAGGTTATAGACTACATCAAAAGGGTTCATAACATCAGCCATGTAACAATCCAGATAGAGCGCTAG 1470 0.4476 MALKELFSKSSKSSTADGEPQHIQRKLKPHIEHQEFSEPRHSQILPGFLSSFAWNRGGLQKPELKSFLDSKMEAHSSNNAQVIEVSGDQEERRNPGGSKICSEAPCGFADAGSISKDSEERSTSMRKLLIAVVLCFIFMTVEVIGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIDRMVAGPREVNGFLMFLVSAFGLVVNIIMALLLGHDHGHGHGHGHGHGHGHGHGHGHDHGHDHHGHSHGFTGSTHDHHPHHHHTKDEHHHAHDDHTHHGHEEPPKEGHHEHNHDFQPLLGEPQPEKKRWNINVQGAYLHVLGDSIQSVGVMIGGAIIWYKPEWQIVDLICTLIFSVIVLGTTINMLRNILEVLMESTPREIDATKLERGLLEMEEVVAVHELHIWAITVGKILLACHVKVRPDADADMVLDKVIDYIKRVHNISHVTIQIER 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181328g00016 489 MobiDBLite consensus disorder prediction 256 341 - -
Stsc181328g00016 489 NCBIfam cation diffusion facilitator family transporter 125 489 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc181328g00016 489 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 79 489 - -
Stsc181328g00016 489 MobiDBLite consensus disorder prediction 304 333 - -
Stsc181328g00016 489 MobiDBLite consensus disorder prediction 257 279 - -
Stsc181328g00016 489 Gene3D Cation efflux protein transmembrane domain 124 410 IPR027469 -
Stsc181328g00016 489 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 417 488 IPR036837 -
Stsc181328g00016 489 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181328g00016 489 Pfam Cation efflux family 128 411 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc181328g00016 489 SUPERFAMILY Cation efflux protein transmembrane domain-like 122 412 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181328g00016 Stsc-Chr181328 101965 106523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181328g00016 72 489 Inorganic Solute Cotransporters AT2G46800 67.780 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181328g00016 K14689 - gmx:100794876 565.074