Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181328g00013 ATGGACGGTTATGATGAGGTTGAAGCTTTTACCGTTTCTGCTTCTGCTGCGGCTGAGAACGGTGATGATGCAAGCACATCCAGAATGAAAGAGGAGCAGAGCGCGAAAAACGAGGACCGTAACGGTAACGGTAACGGTGACGGTAACAGTGAGGAAGTGATTAGGTGGGAGAAGATTCTGGCGCGGAGGGTGGTGAGGGTTTTGGTGGTTGAAGCGGATCACTCTACCCGCCACCTCATCACTGCTATTCTTCGAAAATGCAGTTATTCAGTTATTGCTGTTTCTGATGGATTAAAGGCATGGGAAGTCTTGAAGAAGAAGGCAACAGACCTAGATCTCATATTAACAGAATTGGATTTGCCCGCAATATCCGGATTTGCACTCATTACTTTAATCATGGAGCATGATTTTTGCAAAAACATTCCTGTCATAATGATGTCTTCTCAAGATTCAGTTAACATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAACCTGTCCGGGGGAATGAGCTTAAGAACTTATGGCGGCATGTATGGAGAAGGCACACAATTGACAAGCCTTCTCAAAATACAGCATATCCAGCAGAAAAACTTAAGACTGTTTCGCAAGACAATTCTACAAGCAATCAGTCTAGTGATTTTGTGTCTTCTCTGCAAGAAAATAATGGACGTGGTGAAAATTTGAGTGAGGCTCATAGCACTTGCACTTCGTCATTTTTGGAAGCAGAGAACACATGCATGGAAAAAGGGCAAGATGCATCTGAGTTTAAATTGAGCAATGTTGATGTGGTGCCCCGTGAGGTGTCCACCAACCATGAAAGTAAATCAAAGAGATCAGTGGAACTTGTATCAGAGTCTGCAAGCCACAACAAATCTCTTAAATCAACAGATTTAAGGATAGAACAAGATCATTGTTTTGCTGAAACCAAAAGCCAAGATGAAGTTCTAAGAGCTGAATCGAGCAGAGCCAATCCTAATATTAATGCTGGGATTCATGGTTGTAGCAGTTCAGTGGTTCAGCCCATGGTTGGCACATTTGAGAATGTCGAAAAGCCAACCATTGAAAACGGTAGTTCTAGTGGAGATAATACTACCAAGTCTGTTTCAGATTCAAAAATGGAACTTCCGTTCAGAAGAGACCTTTCTGATAGCTCATGTAAACAAGCAAGTGTGATAACTGAGGAAAGACAAACATTGAAACATTCAGACACGTCTGCTTTTTCTCGGTATGGTGGTCATAAATTGTTGCAGCCTTCTTCCCCGTCACCTTTGATTACCTCTGCCAAAGTAACCAACAATGATCAAAATTCTCAAGAATCTCATAAGTCATCTGGAAATACTCTTGATACTTCTTGTCAGTATAGCGGCACAAGCAACAAAAATGAAGAGAACAGGATAACTCTGGTTGTTGGTCAGTACGGACAATTTGAACCGAATTCATCAATCAATGGATGTGGACTCTTGCCTGTCAGTAAGGCTACTTCTGATGTTAAGTCTAAGGAACATTGTAACATTTTATCTGCTGGTCAGAGTTCAGGTAATAGTTTATCTTCTGATGCTGCAAAACATAAAAGTAGTATTGCCTATGAAAGCGTAGGCAGTGGAAGTGATGGAAATGATACTTCAAATGCGGTGGCCAAGAACAATCCTGAAAATTTTAATGATAGCGTTCACCAAAACTATGATGGATTTAGAGGAACAAACTCTCATCACTTTAGCCAAAGACAAGCAGCCCTAACAAAGTTTCGACTGAAGCGAAAAGAGAGATCCTATGGGAAAAAGGTTCGATATGAAGCCAGGCAAAGATTGGCGGAGCAGCGCCCTCGAGTGAAAGGGCAGTTTGTCCGTAAAGGACGAGATGGTGATCCAGTACCTGACACCGGTGGTGACTCGTAA 1911 0.4197 MDGYDEVEAFTVSASAAAENGDDASTSRMKEEQSAKNEDRNGNGNGDGNSEEVIRWEKILARRVVRVLVVEADHSTRHLITAILRKCSYSVIAVSDGLKAWEVLKKKATDLDLILTELDLPAISGFALITLIMEHDFCKNIPVIMMSSQDSVNMVLKCMLKGAVDFLIKPVRGNELKNLWRHVWRRHTIDKPSQNTAYPAEKLKTVSQDNSTSNQSSDFVSSLQENNGRGENLSEAHSTCTSSFLEAENTCMEKGQDASEFKLSNVDVVPREVSTNHESKSKRSVELVSESASHNKSLKSTDLRIEQDHCFAETKSQDEVLRAESSRANPNINAGIHGCSSSVVQPMVGTFENVEKPTIENGSSSGDNTTKSVSDSKMELPFRRDLSDSSCKQASVITEERQTLKHSDTSAFSRYGGHKLLQPSSPSPLITSAKVTNNDQNSQESHKSSGNTLDTSCQYSGTSNKNEENRITLVVGQYGQFEPNSSINGCGLLPVSKATSDVKSKEHCNILSAGQSSGNSLSSDAAKHKSSIAYESVGSGSDGNDTSNAVAKNNPENFNDSVHQNYDGFRGTNSHHFSQRQAALTKFRLKRKERSYGKKVRYEARQRLAEQRPRVKGQFVRKGRDGDPVPDTGGDS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 356 464 - -
Stsc181328g00013 636 SUPERFAMILY CheY-like 66 194 IPR011006 -
Stsc181328g00013 636 Pfam CCT motif 580 622 IPR010402 GO:0005515
Stsc181328g00013 636 ProSiteProfiles Response regulatory domain profile. 66 184 IPR001789 GO:0000160
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 1 49 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 586 636 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 273 289 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 535 581 - -
Stsc181328g00013 636 SMART REC_2 65 180 IPR001789 GO:0000160
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 424 464 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 195 235 - -
Stsc181328g00013 636 Gene3D - 65 329 - -
Stsc181328g00013 636 ProSiteProfiles CCT domain profile. 580 622 IPR010402 GO:0005515
Stsc181328g00013 636 PANTHER TWO-COMPONENT RESPONSE REGULATOR 65 408 IPR045279 GO:0009736
Stsc181328g00013 636 Pfam Response regulator receiver domain 67 178 IPR001789 GO:0000160
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 356 376 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 535 636 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 24 38 - -
Stsc181328g00013 636 MobiDBLite consensus disorder prediction 272 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181328g00013 Stsc-Chr181328 82242 85724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181328g00013 47 622 Response Regulator Gene Family AT5G24470 33.221 1.02e-84 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc181328g00013 Response_reg 1.8e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181328g00013 K12130 - gmx:100791698 526.168