Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181327g00013 ATGGCTTTGGAAGCTCTGAACTCGCCTACGGCGGCCTCTTTCGAGGACCACCACCGCCGTAACCACTTCGAATCTTGGACGAAAAGAAAGCGCTCAAGGCGCGGATCTTCTCAACCTCACTTTGCTGATTGCTCAAATGGTAACGGTCCGTGTACGGAAGAGGAGTATCTCGCTATATGCCTCATCATGCTTGCTCGCGGACACAGAGAAGCTGAAACCACCACCGCCGCCGTTGTTCCTCCGCCGCAACTTGCTGCCGGAGATTCTTCAACCGCGGCTAAACTCAGCTACAAGTGCTCTGTCTGCAACAAGGCTTTTCCATCTTACCAAGCACTCGGCGGACATAAGGCGAGTCACCGGAAAAACGCAACCACCGGAGGCGGCGCCGGAGATGAAATCTCTACTTCTTCTGCAGCTACCACTAGCTCCGCCACCGCCACTGCCGTGTCCGGCGGCGGTTCAGGGAAGACGCACGAATGCTCAATTTGTCACAAGACTTTCCCGACGGGACAGGCGTTAGGCGGACACAAGAGGTGCCACTACGACGGCGGCGCCGCCGGGAGTGTAGGCGGTGTTACGACGGAGGAAGGTGTTGGATCTACTCACACCGCCTTCAGCCACCGCGATTTCGATCTGAACGTTATTCCGGCGTACGGTGAATTCTCGAGAGATGAAGAAGTAGAGAGCCCTCACCCTGTGATGAAGAAGAAGCAACGTGCTTTCATGGTGCCGAAGATCGAAATCCCTCAAATCCATTAG 759 0.556 MALEALNSPTAASFEDHHRRNHFESWTKRKRSRRGSSQPHFADCSNGNGPCTEEEYLAICLIMLARGHREAETTTAAVVPPPQLAAGDSSTAAKLSYKCSVCNKAFPSYQALGGHKASHRKNATTGGGAGDEISTSSAATTSSATATAVSGGGSGKTHECSICHKTFPTGQALGGHKRCHYDGGAAGSVGGVTTEEGVGSTHTAFSHRDFDLNVIPAYGEFSRDEEVESPHPVMKKKQRAFMVPKIEIPQIH 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181327g00013 252 MobiDBLite consensus disorder prediction 113 156 - -
Stsc181327g00013 252 Gene3D Classic Zinc Finger 94 180 - -
Stsc181327g00013 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Stsc181327g00013 252 MobiDBLite consensus disorder prediction 128 154 - -
Stsc181327g00013 252 SUPERFAMILY beta-beta-alpha zinc fingers 97 180 IPR036236 -
Stsc181327g00013 252 Pfam C2H2-type zinc finger 158 182 - -
Stsc181327g00013 252 Pfam C2H2-type zinc finger 97 121 - -
Stsc181327g00013 252 SMART c2h2final6 158 180 IPR013087 -
Stsc181327g00013 252 SMART c2h2final6 97 119 IPR013087 -
Stsc181327g00013 252 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Stsc181327g00013 252 MobiDBLite consensus disorder prediction 24 45 - -
Stsc181327g00013 252 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Stsc181327g00013 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 180 IPR013087 -
Stsc181327g00013 252 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 27 218 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181327g00013 Stsc-Chr181327 105277 106482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181327g00013 1 237 C2H2 Transcription Factor Family AT1G27730 50.407 7.26e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181327g00013 zf-C2H2_6 1.3e-12 CL0361