Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181327g00012 ATGGAATCTCTAGGAGAATTCCCTAACAATGTAGAATTTGATTGTTTCACCCACACTTCATCACAATTATTTCTTGAACAATGTTCATCACTTCTTCTAGGAGAAGATGATGATGAATTGATGAACTTTGGATTAGTGCAATCCACATTTTTTCCCAATCTCAGTGATGAAAATGATGAGCATGTGTTTCATTCTTTAGATTCTGATCATGACACACAAAATTTGCAATATATTTCACAAGAGAGTAGTTATAATAGCAGCAATAGTAGTGGTGGTGGTGACACTACTGATTTCTTCATCAATGCCAACATGGATCTTCAATACCAGCAAGATCATGTGCTAGCAAATGATGCTTTTATATCCATGGATTTATGTATGGATGAGAAGAATAATCTTGCATGTTTTGCTCCATCAATGAATGAGATTATTGTAATGGAAGACAATGTGGGAAGTGATCATCATTATCAATGTCAAATGGAACAACATGTTGATGATGTTGTTCCAACCAATAATAAGCTCTTGCATCTCAAGAGGAAGATTATTGAAATTGAAGTACCAGAATTATTGGATGTGTCTGCTGAAGACAATGCAAGAAGCAACAGATCTGAGAATCAAAACAAAAAACCTCGCCTTGTGAAAGATTTGCAAGGTTGCATGAAAAATGGAAGGTCCAAGAGAAATGGGAATGAGGGAGAAGAGACTAATAATAACGTAGGATTAGATGGACAGAGCTCAAGTAGTAACATATCTGAGGATAATGACAATACTACTTCTCAAGAAAACAACAATGGAGGGGCAACTTCGGTATCTCACTCAAATAATAATGGCAGAACAAGAACTACCAGAGGAACAGCAACAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAGAGGATAAATGAACGACTAAGGATTTTGCAGAATCTTGTTCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAATTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATTTGTGGATGTATGCTCCTCTTGCTTATAATGGGCTTGATATTGGACTCAAACTCAATAATAACCTCAAGAATTTTCCATCATCACTATGA 1122 0.3619 MESLGEFPNNVEFDCFTHTSSQLFLEQCSSLLLGEDDDELMNFGLVQSTFFPNLSDENDEHVFHSLDSDHDTQNLQYISQESSYNSSNSSGGGDTTDFFINANMDLQYQQDHVLANDAFISMDLCMDEKNNLACFAPSMNEIIVMEDNVGSDHHYQCQMEQHVDDVVPTNNKLLHLKRKIIEIEVPELLDVSAEDNARSNRSENQNKKPRLVKDLQGCMKNGRSKRNGNEGEETNNNVGLDGQSSSSNISEDNDNTTSQENNNGGATSVSHSNNNGRTRTTRGTATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLKLNNNLKNFPSSL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181327g00012 373 Gene3D - 286 342 IPR036638 GO:0046983
Stsc181327g00012 373 MobiDBLite consensus disorder prediction 194 214 - -
Stsc181327g00012 373 CDD bHLH_AtIND_like 285 347 - -
Stsc181327g00012 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Stsc181327g00012 373 FunFam Basic helix-loop-helix transcription factor 285 342 - -
Stsc181327g00012 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 356 - -
Stsc181327g00012 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 348 IPR036638 GO:0046983
Stsc181327g00012 373 MobiDBLite consensus disorder prediction 194 292 - -
Stsc181327g00012 373 SMART finulus 290 339 IPR011598 GO:0046983
Stsc181327g00012 373 MobiDBLite consensus disorder prediction 231 288 - -
Stsc181327g00012 373 Pfam Helix-loop-helix DNA-binding domain 294 334 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181327g00012 Stsc-Chr181327 83939 86019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181327g00012 213 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 62.162 2.83e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181327g00012 HLH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181327g00012 - - aip:107648570 379.793