Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181327g00002 ATGGGAACCGAGGGCACCACAAACTACACCTACTTTGGGCGAAGCATCAGCCAGCTCAGCATCAACGACGAGTCCTCTTCCTCCGCTTTCAGCGACTGCAACAGCGACAGATCCGGTGAATTCTCCGCCGCCTCCTCCCAGACTCGCCGCTTCCTACTTGCCTGCGCCGCCGACAACTCCGACGACTTAATCCGCCAGCTCGTCTCCGATCTAGGCTCCGATTCCGTCAATGAGCAAAAACAAGCCGCCATGGAGATCCGCCTCCTCGCGAAGAACAAACCGGAGAATCGAATCAGAATTGCCAAAGCCGGCGCGATCAAACCGTTAATTTCGCTTATTTCGTCCCAAGACCTTCAGGTCCAGGAGTACGGCGTCACAGCGATACTGAACTTATCCCTCTGCGACGAGAACAAGGATGCCATCGCTTCCGCCGGTGCGATTCGACCTCTGGTTCGTGCGCTGACTTCGGGAAATTCAACGGCGAAGGAAAACGCCGCGTGCTCGCTTCTCCGGCTGTCGCAGGTGGATTCTCACAAGGCGGCAATAGGAAGAGCCGGCGCGATTCCACCGCTTGTGAAGCTTCTAGAAGCCGGAAGTAGCCGAGGAAAGAAGGACGCGTCAACTGCTCTGTACTCGCTGTGTTCTACCGTGAAGGAGAACAAGGTGAGGGCGGTGAAGGCAGGGATAATGAGGGTGCTGGTGGAGTTGATGGCGGACTTGGAGGGGGAGATGGTGGACAAATCGGCATATGTTGCGAGCGTGGTGGTGACAGTGGCGGAGGGGAGGGCGGCGTTTGTGGCGGAAGGGGGGATTCCGGTGCTGGTGGAGATAGTGGAGGTTGGGACACAGAGGCAGAAGGAGATTGCGGTGGTTATACTGTTGCAGGTTTGTGAGGAGAGCGCCGCGTACAGAAAGCTGGTGTTTGACGAAAGCGCTATCCCTCCCTTGGTTGCTTTGTCCCAATCCGGCACCAATCGCGCCAAACAAAAGGCAGAGAAACTAATTGAGCTTCTAAGGCAACCAAGATCCGGCAATGGCAGTGCTCGTGCGTCAGAAGTGACAGGGTAA 1068 0.5655 MGTEGTTNYTYFGRSISQLSINDESSSSAFSDCNSDRSGEFSAASSQTRRFLLACAADNSDDLIRQLVSDLGSDSVNEQKQAAMEIRLLAKNKPENRIRIAKAGAIKPLISLISSQDLQVQEYGVTAILNLSLCDENKDAIASAGAIRPLVRALTSGNSTAKENAACSLLRLSQVDSHKAAIGRAGAIPPLVKLLEAGSSRGKKDASTALYSLCSTVKENKVRAVKAGIMRVLVELMADLEGEMVDKSAYVASVVVTVAEGRAAFVAEGGIPVLVEIVEVGTQRQKEIAVVILLQVCEESAAYRKLVFDESAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSGNGSARASEVTG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181327g00002 355 SMART arm_5 93 133 IPR000225 GO:0005515
Stsc181327g00002 355 SMART arm_5 175 215 IPR000225 GO:0005515
Stsc181327g00002 355 SMART arm_5 257 298 IPR000225 GO:0005515
Stsc181327g00002 355 SMART arm_5 134 174 IPR000225 GO:0005515
Stsc181327g00002 355 PANTHER U BOX DOMAIN-CONTAINING 63 339 - -
Stsc181327g00002 355 Gene3D - 156 248 IPR011989 -
Stsc181327g00002 355 Gene3D - 249 338 IPR011989 -
Stsc181327g00002 355 SUPERFAMILY ARM repeat 60 335 IPR016024 -
Stsc181327g00002 355 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 146 IPR000225 GO:0005515
Stsc181327g00002 355 Gene3D - 22 155 IPR011989 -
Stsc181327g00002 355 FunFam RING-type E3 ubiquitin transferase 53 344 - -
Stsc181327g00002 355 Pfam Armadillo/beta-catenin-like repeat 135 172 IPR000225 GO:0005515
Stsc181327g00002 355 Pfam Armadillo/beta-catenin-like repeat 178 215 IPR000225 GO:0005515
Stsc181327g00002 355 Pfam Armadillo/beta-catenin-like repeat 94 132 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181327g00002 Stsc-Chr181327 15512 19258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181327g00002 42 345 U-box Gene Family AT2G23140 49.013 4.02e-83 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181327g00002 - - gmx:100797550 524.628