Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181326g00023 ATGAGGCCGGTTTTCGTTGGGAACTTTGAGTATGATACCCGTCAGTCAGAGCTTGAGCGCTTGTTCACCAAGTATGGCAGGATCGAGCGCGTTGACATGAAATCTGGGTTTGCTTTTGTCTATTTTGAGGATGAGCGAGATGCTGAAGATGCAGTTCGTGCTCTTGACAACTTCCCATTTGGTTATGAGAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGTCGCCATCGTGATGGCTCAAAGTCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGATCCAATTCGCACCCGAGTTCGTGACATAGAAAGACATTTTGAACCTTATGGGAAGGTTCTTCATGTTCGAATTCGTCGTAACTTTGCATTTGTGCAGTTTGAAACACAGGAAGATGCTACTAAAGCTCTTGAGTGTACACATATGAGCAAGATATTGGATAGAGTTGTGTCTGTGGAGTATGCTCTGAGGGATGATGATGAAAAGGGTGACAGATATTATGACAGTCCTAGAAGGGGTTATGGGAGATCACCCAGTCCTGGTTATAGGAGGCGACCAAGTCCTGACTATGGCCGTCCACGCAGTCCTGTGTATGATAGGTACAGCGGTCCAGCCTATGATAGGCGTAGGAGCCCTGAATATGGCAGGCCTCGCAGCCCTGAGTATGGTAGGAACAGGAGTCCTGAATATGGGAGACATCGCAGCCGAACACCAATTCGAAGATCCAGAACTTAA 750 0.4747 MRPVFVGNFEYDTRQSELERLFTKYGRIERVDMKSGFAFVYFEDERDAEDAVRALDNFPFGYEKRRLSVEWARGERGRHRDGSKSNQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDEKGDRYYDSPRRGYGRSPSPGYRRRPSPDYGRPRSPVYDRYSGPAYDRRRSPEYGRPRSPEYGRNRSPEYGRHRSRTPIRRSRT 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181326g00023 249 SMART rrm1_1 92 158 IPR000504 GO:0003723
Stsc181326g00023 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Stsc181326g00023 249 MobiDBLite consensus disorder prediction 166 249 - -
Stsc181326g00023 249 MobiDBLite consensus disorder prediction 208 240 - -
Stsc181326g00023 249 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Stsc181326g00023 249 CDD RRM2_AtRSp31_like 92 161 - -
Stsc181326g00023 249 Gene3D - 1 82 IPR012677 -
Stsc181326g00023 249 Gene3D - 83 172 IPR012677 -
Stsc181326g00023 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Stsc181326g00023 249 SUPERFAMILY RNA-binding domain, RBD 83 188 IPR035979 GO:0003676
Stsc181326g00023 249 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Stsc181326g00023 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 237 - -
Stsc181326g00023 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Stsc181326g00023 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Stsc181326g00023 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Stsc181326g00023 249 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181326g00023 Stsc-Chr181326 124943 127794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181326g00023 4 198 Eukaryotic Initiation Factors Gene Family AT1G49760 24.885 1.92e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181326g00023 K12893 - gmx:100797709 394.815