Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181326g00007 ATGGAGGAGTTGATAATCTCTCCCTCATCATCATCATCACTGGTGTCTATCCCACAAGAAAACACACCAACCCTACTTCAGGAGAAGCTTCATTTCCTACTCCAAAACCAGTTACCAGAATGGTGGGTCTATGCCATCTTCTGGCACACCACCAACGACGACAATGGCAATCTCTTCCTCTCCTGGGGAGACGGCCATTTCCAAGGCGCCAAAGACGCCTCCTCCCCTAGACTTATCCCTCACTACCCCATTTCGGCGCCAGACAGATCCAGAAAGTTCAACAACAACAACACTAATAACGACGGAGAATGGTTCTACGTGATGTCATTGACTCGCACCTTCCCTGTGGGAGAAGCTTCATATTCTTCGCTACCGGGGAAGGCTTTGGCTTTGGGGTCTCCCATCTGGCTGCTCAAGGGCGACCTTCAGTTCAGCGACTGTGACAGAGCTAAAGAAGCTTACATGCATGGCATCCAAACTCTCATACACATTCCAACCACCGATGGTGTTCTCGAAATGGGTTCCTACGATCTCATCACCCAAAACTGGTCTCTCCTTCAACAAACCAAGTCTCTCTTTGGATCTCAATCAGATCTCATTCCCAATAATAAGCAACTCAATAATCCGCCGATACAGTTCTTCGACGACCAGAACATCTCCTTCGCTGACATTGGCATTATCGCCGGCGTTCAAGAAGAAGACAACTCACACCAAGAAGATCCCGCTGCCGCAAGAAAGAGAAAGGAAAGGGAAGAACTCAACAACAAGAATAAGGATCACGAATCAATAGGAGGAAAGTTCATCAGGTCGTCGCGCCAATCGTCCTTCGTGGATTCGGATCATTCAGACTCGGACTGCGGTGCACCAATGGCTGCGGCGGAGAAGAGGTTGCCTAAGAAGAGAGGGAGAAAGCCAGGGCTAGGGCGTGAAACCCCGCTGAATCACGTGGAGGCAGAGCGGCAGCGAAGGGAGAAGCTTAACCACCGGTTCTACGCTCTCAGAGCGGTGGTTCCAAACGTGTCGAGGATGGACAAAGCTTCCTTGCTTTCGGACGCGGTATCTTACATCAACGAGCTGAAGGCAAAGATCGAAGAGTTGGAGACTCAGGTGCAGAAAGAATCATCCATCAACAACAACAATAATAAGAAGGTGAAGGTTGAAACTGGCGACAGCATGGACAACCAGAGCACCACCACCACGACGTCCTCCGTGGACCAAAGCAACAATAATAGTGAGAATGAGGCGGCGGAGGTAGAGGTGGAGGTGGAGGTGAAGATGATAGGAGGAGAGGCGGCGATGGTGAGGGTTCAGTCGGAGAGTGGGAGGCACCCAGGTGCGAGGCTGATGAATGCATTGCGGGAATTGGAGCTTGAAGTGCAGAATGGAAGCATGTGGTGCGTCAATGAGAGTAGCATGATGCTCCAACATGTTCTTGTGAAGGTTCCAGCAGCATCTGCATCAGTCATGAGAACCGAAGAAGCTCTTAAGTCTGCCATTCTAAGCAGATTATTGGATCATCATTCTCATCATCTTGAGTAA 1539 0.5003 MEELIISPSSSSSLVSIPQENTPTLLQEKLHFLLQNQLPEWWVYAIFWHTTNDDNGNLFLSWGDGHFQGAKDASSPRLIPHYPISAPDRSRKFNNNNTNNDGEWFYVMSLTRTFPVGEASYSSLPGKALALGSPIWLLKGDLQFSDCDRAKEAYMHGIQTLIHIPTTDGVLEMGSYDLITQNWSLLQQTKSLFGSQSDLIPNNKQLNNPPIQFFDDQNISFADIGIIAGVQEEDNSHQEDPAAARKRKEREELNNKNKDHESIGGKFIRSSRQSSFVDSDHSDSDCGAPMAAAEKRLPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYINELKAKIEELETQVQKESSINNNNNKKVKVETGDSMDNQSTTTTTSSVDQSNNNSENEAAEVEVEVEVKMIGGEAAMVRVQSESGRHPGARLMNALRELELEVQNGSMWCVNESSMMLQHVLVKVPAASASVMRTEEALKSAILSRLLDHHSHHLE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181326g00007 512 CDD bHLH_AtAIB_like 308 372 - -
Stsc181326g00007 512 MobiDBLite consensus disorder prediction 304 321 - -
Stsc181326g00007 512 SMART finulus 316 365 IPR011598 GO:0046983
Stsc181326g00007 512 MobiDBLite consensus disorder prediction 370 415 - -
Stsc181326g00007 512 MobiDBLite consensus disorder prediction 233 266 - -
Stsc181326g00007 512 MobiDBLite consensus disorder prediction 230 321 - -
Stsc181326g00007 512 Coils Coil 349 383 - -
Stsc181326g00007 512 Coils Coil 243 263 - -
Stsc181326g00007 512 PANTHER MYC 18 502 IPR045084 GO:0003700|GO:0006355
Stsc181326g00007 512 Gene3D - 308 375 IPR036638 GO:0046983
Stsc181326g00007 512 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 193 IPR025610 -
Stsc181326g00007 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 372 IPR036638 GO:0046983
Stsc181326g00007 512 MobiDBLite consensus disorder prediction 370 418 - -
Stsc181326g00007 512 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Stsc181326g00007 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Stsc181326g00007 512 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181326g00007 Stsc-Chr181326 40172 41710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181326g00007 26 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.014 1.02e-74 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181326g00007 bHLH-MYC_N 2.2e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181326g00007 - K13422 adu:107491832 755.362