Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181325g00012 ATGGGTATGTCTACTGCTGCTTCACAGTTTCATGTTTTGGCGGTTGATGACAGCCTAATTGATAGAATGCTCATTGAGAGGCTCCTTAAAACCTCTTCATTCCATGTTACTACAGTGGACTCTGCTGTTAAGGCTTTACAATACCTTGGTTTGGTTGAAGATAAACTAAGGAGTTATCACACTAATTCTGAAATTCATCATCAGGATGTGGAAGTTAATGTAAATCTGATCATAACAGATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTAAGAAAAATCAAGGAATCAAATTATCTTAAAGACATACCTGTTGTGATCATGTCTTCGGAGAATGTTCCATCAAGGATCAATAGATGCTTGGAAGATGGGGCTGAAGAATTTTTTCTGAAACCCGTTCAACAATCAGATGTGAACAAGCTCAAGCCCCATTTATTGATGAAATCAAGAGCTAAAGAAGAAGAGGAGGAAACCCAACCCATCAACAACAATAACAAGAGGAAAAGCATGGTTGAAAGCCAATCCCCAGATAAAACAAGAATTAAGTGTATCATTTAA 561 0.3761 MGMSTAASQFHVLAVDDSLIDRMLIERLLKTSSFHVTTVDSAVKALQYLGLVEDKLRSYHTNSEIHHQDVEVNVNLIITDYCMPEMTGYDLLRKIKESNYLKDIPVVIMSSENVPSRINRCLEDGAEEFFLKPVQQSDVNKLKPHLLMKSRAKEEEEETQPINNNNKRKSMVESQSPDKTRIKCII 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181325g00012 186 ProSiteProfiles Response regulatory domain profile. 11 147 IPR001789 GO:0000160
Stsc181325g00012 186 Pfam Response regulator receiver domain 12 139 IPR001789 GO:0000160
Stsc181325g00012 186 MobiDBLite consensus disorder prediction 150 181 - -
Stsc181325g00012 186 Gene3D - 11 183 - -
Stsc181325g00012 186 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 173 IPR045279 GO:0009736
Stsc181325g00012 186 SMART REC_2 10 146 IPR001789 GO:0000160
Stsc181325g00012 186 CDD REC_typeA_ARR 12 142 - -
Stsc181325g00012 186 SUPERFAMILY CheY-like 9 145 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181325g00012 Stsc-Chr181325 101330 103739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181325g00012 1 165 Response Regulator Gene Family AT3G57040 61.988 1.63e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181325g00012 Response_reg 1e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181325g00012 K14492 - gmx:100787436 261.536