Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181323g00005 ATGGCTAGGAGCTGGCTTATCGACATAGGTGGAATTGCCAAGAAAGTGAAAAGCACAAATTTATCTTCAGCTGATCAAATAAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTAATTACCGTATTGATAACCGTGATGTTTCTGTCGAGTGGCCTGGCTTTCCTGTTGGTGTGAAGTTTGATCCTTCTGATGTAGAACTCCTAGAACATTTAGCAGGAAAATGTAGCATTGGAAATGCACAGCTGCATATGTTTATTAATGAGTTCATTCCAACATTAGACGAAGAAGAAGGTATTTGCTATACACATCCGGAAAATCTTCCAGGTGTCAAGAAAGATGGGAGCAGTGTCCATTTCTTTCATAGAACAACCAATGCCTATACTACTGGTCAACGGAAGCGTCGAAAGATTCATCATCAATCTTTGACTGAAGAGCATGTACGGTGGCATAAGACTGGTAAGACAAAAGCTATATTAGAGGATGGAGTACATAAGGGCTTTAAGAAGATCATGGTTCTTTATATAAGACCTAAGAATGGGTCCAAACCCGAAAAAACCAATTGGGTGATGCACCAATACCATTTAGGGACTGATGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAGATTTTGCACAAGCAAACTCAGAAAAATGAGGAGAATCCAGCGGCTGAAGATTTTGACCAGAATGAGAAAAATGAGAATCAATTGGCTGATGATTCCAACTGTATGGCATGCCGAACCAGCCCAAGAACTCCGAAACCAAATCCCCCAAATCCACCTCGAGCTGGAAAAGTTGTAGACAGTGATGATAATATTGAGGAAACTGAACTTCAATTCACCCAGGATGTGAAGAGTGTCCCACTATGTGATGTTCCGGAGCAGAACAATGCCGGTGACCCTGCATGGCTGGCAGGTGAATCACAGGCTGTAGAGAACTTTGACTTTGATGGCTTGGATGACATCTTGTTCTGCAATGAAATATTCGATTCTTCAGCTCTACTAGGTTTATCTGGAACGGAAACCACGGTAGATGGATTTGCTTCCTCTAATGCAAACGATATGGTTGGGAATAATAATTTATCTAATGAAACTTCGGTTCTTGACACCCTTGATTTGGGTACTCCCCCAGATTTTGATCTTTCGAATCTGGATTTTTATTCTCAAGACAGTATATTCGACTGGGTTGACAGATTATGA 1206 0.4104 MARSWLIDIGGIAKKVKSTNLSSADQIKDCGAYRECPNCNYRIDNRDVSVEWPGFPVGVKFDPSDVELLEHLAGKCSIGNAQLHMFINEFIPTLDEEEGICYTHPENLPGVKKDGSSVHFFHRTTNAYTTGQRKRRKIHHQSLTEEHVRWHKTGKTKAILEDGVHKGFKKIMVLYIRPKNGSKPEKTNWVMHQYHLGTDEDEKDGEYVVSKILHKQTQKNEENPAAEDFDQNEKNENQLADDSNCMACRTSPRTPKPNPPNPPRAGKVVDSDDNIEETELQFTQDVKSVPLCDVPEQNNAGDPAWLAGESQAVENFDFDGLDDILFCNEIFDSSALLGLSGTETTVDGFASSNANDMVGNNNLSNETSVLDTLDLGTPPDFDLSNLDFYSQDSIFDWVDRL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181323g00005 401 MobiDBLite consensus disorder prediction 216 237 - -
Stsc181323g00005 401 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
Stsc181323g00005 401 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Stsc181323g00005 401 SUPERFAMILY NAC domain 40 215 IPR036093 GO:0003677|GO:0006355
Stsc181323g00005 401 FunFam NAC domain-containing protein 8 64 219 - -
Stsc181323g00005 401 MobiDBLite consensus disorder prediction 216 270 - -
Stsc181323g00005 401 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 293 IPR044799 GO:0003700
Stsc181323g00005 401 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181323g00005 Stsc-Chr181323 39382 44511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181323g00005 33 221 NAC Transcription Factor Family AT4G28500 56.021 2.46e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181323g00005 NAM 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181323g00005 - - gmx:100794879 537.339