Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00025 ATGGAACACAAGGACAGGGAAGTACTTTGTTTATTTATAGGTTTCTGTTTCCTCTTCATTCTAGTCAATTTCTCCGACATTCTCTTGTGTCTCTTGTTGAAAGCTTACCGTTTCCTCACCGGGTGCCACTCCTCATCGGAAGTTAACCCATCAAGCACCCCTAATGATCTGCAGCATCATCAAGTTGTCATCGACTCGTTCCCCGATACAGTTTCTCTACAAAGCGACGGCTTAGACACCTCTGTGATAAGTTCTCTTCCGGTGTCGGAGTTCGATAATGTGGGAGAGCACAAGTCTATCAATGCAGATTGTGTCATTTGCCTGGGGGATTTCGAAAAAGGGGAGAAGCTTAGGCTGCTTCCAAAATGTGGTCATGCTTTCCATGTTTCTTGCATAGATGCATGGTTTCAGTCTCATTCCAACTGCCCAATTTGCAGGTCCCAAGTCCATTATGTTGAAGATGGTAACTCTGAGCACTCGGCATCTTCGTATCCATTGTTGGAAACTCTGAGGAGGGAAGACTTTTCCCGAGACAGCGATGCAATAATCCGATCAGTTCGCTCCGAGATCATACAAAGCTGGGCAAGTAGACCACACACACTCTAG 606 0.4587 MEHKDREVLCLFIGFCFLFILVNFSDILLCLLLKAYRFLTGCHSSSEVNPSSTPNDLQHHQVVIDSFPDTVSLQSDGLDTSVISSLPVSEFDNVGEHKSINADCVICLGDFEKGEKLRLLPKCGHAFHVSCIDAWFQSHSNCPICRSQVHYVEDGNSEHSASSYPLLETLRREDFSRDSDAIIRSVRSEIIQSWASRPHTL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00025 201 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 152 IPR044675 -
Stsc181322g00025 201 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Stsc181322g00025 201 FunFam E3 ubiquitin-protein ligase ATL6 65 152 - -
Stsc181322g00025 201 CDD RING-H2_EL5-like 103 146 - -
Stsc181322g00025 201 SUPERFAMILY RING/U-box 103 152 - -
Stsc181322g00025 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 151 IPR013083 -
Stsc181322g00025 201 SMART ring_2 104 145 IPR001841 -
Stsc181322g00025 201 Pfam Ring finger domain 103 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00025 Stsc-Chr181322 116639 117512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00025 30 154 C3H Transcription Factor Family AT5G17600 41.732 3.81e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00025 - - adu:107461568 332.413