Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00020 ATGAAGAGAGGAAGAGAAGAGGGTTGCAAGCAGATAGAGGCGGATAATTGTTTGATGCTATTAACCAAAGTTGGTGAAAGCGATAAGATTAGTTCAGTGAAGGATAATAAAGAGCTAAGGAACGATGATGGTGCTTACAAGTGCAAAACATGCAAAAGAAACTTCACTTCTTTTCAAGCACTTGGAGGCCACAGAGCAAGCCACAAGAAGCCCAAGCTCATGGTTTCGGACCTATCATGCCATTCTCAACACTTACGGGGCCCCAACAGTAAGCCCAGGACGCACCCATGTCCAATTTGTGGGCTTGAGTTTTCAATTGGACAAGCACTTGGAGGACACATGAGAAAGCATAGGGTTGCAACCACTAAAGACGATAGTGGTGATGGGAATGATCATCATAAGAGGTTAAATCTGTGCTTGGATTTGAACTTGACGCCATTGGAGAATGATCTTGTAAAGCTCGACCTCATCAGGATTCCTCTTCTTTCACTTCATTGA 498 0.4378 MKRGREEGCKQIEADNCLMLLTKVGESDKISSVKDNKELRNDDGAYKCKTCKRNFTSFQALGGHRASHKKPKLMVSDLSCHSQHLRGPNSKPRTHPCPICGLEFSIGQALGGHMRKHRVATTKDDSGDGNDHHKRLNLCLDLNLTPLENDLVKLDLIRIPLLSLH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00020 165 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Stsc181322g00020 165 Pfam C2H2-type zinc finger 45 71 - -
Stsc181322g00020 165 Pfam C2H2-type zinc finger 95 118 - -
Stsc181322g00020 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Stsc181322g00020 165 SUPERFAMILY beta-beta-alpha zinc fingers 45 117 IPR036236 -
Stsc181322g00020 165 Gene3D Classic Zinc Finger 22 120 - -
Stsc181322g00020 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Stsc181322g00020 165 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Stsc181322g00020 165 PANTHER ZINC FINGER PROTEIN ZAT5 10 149 - -
Stsc181322g00020 165 SMART c2h2final6 46 68 IPR013087 -
Stsc181322g00020 165 SMART c2h2final6 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00020 Stsc-Chr181322 80844 81396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00020 1 152 C2H2 Transcription Factor Family AT3G53600 44.172 2.34e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181322g00020 zf-C2H2_6 6.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00020 - - gmx:100781211 180.259