Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00018 ATGGCTCAAAGAATTGGGACAAAGCTGTTCGTGAGCAGATTATCGTTTTACACTACCAAAGACCAGTTCAAGAACATGTTTTCTCCTTTCGGACAAGTTACCGAAGCTAATCTGGTGATGGATTCCAGAACTGGAAGGACCAAAGGATTTGGTTTCGTTTCCTATCAATCTGAAGACGAAGCACTCAAGGCTATCAAAGCCTTGAATGGCAGGATAATTGCAGGAAGGATTATTTTCGTTGAACCTGCTAAAGATAATAAGTGA 264 0.4091 MAQRIGTKLFVSRLSFYTTKDQFKNMFSPFGQVTEANLVMDSRTGRTKGFGFVSYQSEDEALKAIKALNGRIIAGRIIFVEPAKDNK 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00018 87 SUPERFAMILY RNA-binding domain, RBD 6 86 IPR035979 GO:0003676
Stsc181322g00018 87 SMART rrm1_1 8 81 IPR000504 GO:0003723
Stsc181322g00018 87 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Stsc181322g00018 87 Gene3D - 2 87 IPR012677 -
Stsc181322g00018 87 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 87 - -
Stsc181322g00018 87 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 86 - -
Stsc181322g00018 87 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00018 Stsc-Chr181322 75071 75919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00018 6 80 Eukaryotic Initiation Factors Gene Family AT1G71770 37.333 1.09e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00018 - K13195 pcin:129306862 119.012