Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00016 ATGTCTGCGGCACTCGATATGACGCTTGACGACATCATTAAGAACAACAAGAAGTCCGGATCCGGTGGATCCCGCGGCCGTCCTCGCCAATCCGGATCCGGACCCGGACCTGCTCGCCGCTTCCCCAATCGCGCCGCCAACCGCGTTGCGCCTTATGCCGCCGCTAAGGCGCCGGAGACAGCGTGGCAGCACGACCTGTATGCAGATCAGGCTGTGGGAGCTTTTCCTGTTCAGGGTGGTCGACCGTCGTCGATTGAAACGGGGACCAAGCTATACATCTCGAATTTGGATTACGGTGTTTCTAACGATGACATCAAGGAGTTATTTTCTGAAGTTGGTGACCTGAAACGGCACACAGTTCATTACGACAGGAGTGGGAGATCGAAGGGTACAGCGGAAGTAGTCTTCTCGCGGAGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAATGTGCAACTTGATGGGAAACCAATGAAGGTAGAGATTGTTGGAACGAATATCACAACACAAGCTGTTGCTCCAGCAGCAAATGGAGGTTTTGGAAATTTGAACGGAGTTCCTAGAAGTGGACAAGGGAGAAGTGGAGGGCCATTAGTACGACCACGCGGTGGTGGTGGAGGTAGAGGGCGTGGCCCTCCTCGAAGAGGAAGAGGTCGTGGTCGCGGAAGTGGTCGTGGTGAGAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTACCATTCAGAGGCAATGCAATTAAACTGA 753 0.5312 MSAALDMTLDDIIKNNKKSGSGGSRGRPRQSGSGPGPARRFPNRAANRVAPYAAAKAPETAWQHDLYADQAVGAFPVQGGRPSSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNITTQAVAPAANGGFGNLNGVPRSGQGRSGGPLVRPRGGGGGRGRGPPRRGRGRGRGSGRGEKVSAEDLDADLEKYHSEAMQLN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00016 250 SMART rrm1_1 90 162 IPR000504 GO:0003723
Stsc181322g00016 250 MobiDBLite consensus disorder prediction 1 54 - -
Stsc181322g00016 250 Pfam C-terminal duplication domain of Friend of PRMT1 200 245 IPR025715 -
Stsc181322g00016 250 MobiDBLite consensus disorder prediction 14 28 - -
Stsc181322g00016 250 MobiDBLite consensus disorder prediction 183 250 - -
Stsc181322g00016 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Stsc181322g00016 250 Gene3D - 78 231 IPR012677 -
Stsc181322g00016 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Stsc181322g00016 250 MobiDBLite consensus disorder prediction 221 243 - -
Stsc181322g00016 250 FunFam THO complex subunit 4 82 232 - -
Stsc181322g00016 250 CDD RRM_THOC4 89 163 - -
Stsc181322g00016 250 SMART FoP_duplication_2 177 250 IPR025715 -
Stsc181322g00016 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 248 - -
Stsc181322g00016 250 SUPERFAMILY RNA-binding domain, RBD 83 163 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00016 Stsc-Chr181322 66823 69488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00016 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 2.91e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00016 K12881 - gmx:100817317 302.753