Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00008 ATGGAGAGTGGTGCAGGATCTTCTTCGTCTTCACGATGGAACCCAACCAAGGAGCAGATAAGCATGTTAGAGGAAATATATAACCAGGGAGTGAGAACACCAAACCCTAAAGAAATTAAGGAGATTATGGAAAGGCTCAAGGTTTATGGTCCAATTGAAGGCAAGAACATCTTCTACTGGTTCCAGAATCACAAAGCTAGGCAGCGTCAAAGACACAAGGATCAACAACAACAACTACAACTTCACCATAATCATCCTTATATGAATCACTTTCTTCACCCCATTTCTCCCCCGCTTTCTCCTGTGGTGCGTAGTCAAACATATGGGTTAGTACAGAGTGAAATGGGGTATTATCCAAATCAACAACAAAATATGGCTATAAGCCCAAGGACTGATCAAGCAGTGCCTAGGATGATGATGCCATCTCAGCCAATCAGTCCAATGGTGATCCCACGTGGGCCCTTGAGCCCAAGGAATGTGATGTATGGCCAGCCTATGTATGAGCAACAAAGCGGCCCAAGAACTTTGGATTTGTTCCCACAGCACCCCACTGGCACTTTGGCAGGCAGGGAAAGACAACAGCAATCTCATGAACCTTCTAATCACAGCTTCATTGATTTTTTCACTCCTAATTCAGGCCGAGGCCCTCCTCGTCCTTGA 660 0.4545 MESGAGSSSSSRWNPTKEQISMLEEIYNQGVRTPNPKEIKEIMERLKVYGPIEGKNIFYWFQNHKARQRQRHKDQQQQLQLHHNHPYMNHFLHPISPPLSPVVRSQTYGLVQSEMGYYPNQQQNMAISPRTDQAVPRMMMPSQPISPMVIPRGPLSPRNVMYGQPMYEQQSGPRTLDLFPQHPTGTLAGRERQQQSHEPSNHSFIDFFTPNSGRGPPRP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00008 219 ProSiteProfiles 'Homeobox' domain profile. 6 71 IPR001356 GO:0003677
Stsc181322g00008 219 MobiDBLite consensus disorder prediction 168 219 - -
Stsc181322g00008 219 CDD homeodomain 12 72 IPR001356 GO:0003677
Stsc181322g00008 219 SUPERFAMILY Homeodomain-like 7 77 IPR009057 -
Stsc181322g00008 219 SMART HOX_1 8 75 IPR001356 GO:0003677
Stsc181322g00008 219 Pfam Homeodomain 10 70 IPR001356 GO:0003677
Stsc181322g00008 219 Gene3D - 2 86 - -
Stsc181322g00008 219 MobiDBLite consensus disorder prediction 187 208 - -
Stsc181322g00008 219 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 200 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00008 Stsc-Chr181322 43706 44744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00008 2 217 Wox Gene Family AT5G59340 34.538 2.24e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc181322g00008 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00008 - - aip:107612346 277.715