Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00006 ATGGTTTTCCCTTCTATCCCACTCTATTTAGATCCTCCCACCAATTGGCACCAGCAGCAACCAAGTCAACAACATCATCATCATCACCAGGCAATAAATGGCAATGAAAGTTCGTCTGAGCTGCTCCCTCAGTTGCCGCCCCTGCAAGCACAGGGCCCTCAGATGGGCTCAGTTAGGCCCGGGCCGACGGGAGATCGGGGACAAATAGCGAAGATATCATCAGGAGGAGGAGGAGAGGGAGCATTGAAGTGTCCTCGGTGCGAATCAAGCAACACAAAGTTCTGCTACTTCAACAACTACAGCCTGTCTCAGCCGCGACACTTCTGCAAGACGTGTAGGCGTTACTGGACAAGAGGCGGCGCCCTTAGGAACGTCCCCGTCGGTGGCGGTTGCCGGAGAAGCAAGAAGACCAAGAGGAGTAGTAGCCAGTCCAAGTCACCGGCACCACCAGCAGCAACAGCAGCAAACACTGAAAAGCAGTCATCCTCAGTTCCTTCATCAGGTTTTAACAACAACCGAGGTTTCATGGCTTCTCTTGAGAATATGAGCCTCTATGGAGGAGGAGGAGTAGAACAGTGGCGGTTGCATCAGCATCAGCAGCAATTTCCAAATTTGTTGAGTGGTTTTGATCCAATAACTAGTTCTTCTTCGTTCCCTTTGGTGCAGAGTAGTGTTATTGAAGGTGGCTTGTTTGGAGAATCTAGGGTTAAAATGGAATCTGGGAACGGAGGCCTATTAAGCAGTAATTTGTCAAGAATATCCCCTCTCATGAGTTTTACAGAGAATTATTCATGGACTGATCTTGCCGCATCATCTTCTTCCGCTGCTCATCATCTCTTCTGA 843 0.4935 MVFPSIPLYLDPPTNWHQQQPSQQHHHHHQAINGNESSSELLPQLPPLQAQGPQMGSVRPGPTGDRGQIAKISSGGGGEGALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSKKTKRSSSQSKSPAPPAATAANTEKQSSSVPSSGFNNNRGFMASLENMSLYGGGGVEQWRLHQHQQQFPNLLSGFDPITSSSSFPLVQSSVIEGGLFGESRVKMESGNGGLLSSNLSRISPLMSFTENYSWTDLAASSSSAAHHLF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00006 280 MobiDBLite consensus disorder prediction 12 45 - -
Stsc181322g00006 280 MobiDBLite consensus disorder prediction 141 169 - -
Stsc181322g00006 280 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Stsc181322g00006 280 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Stsc181322g00006 280 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Stsc181322g00006 280 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 180 IPR045174 GO:0003700|GO:0006355
Stsc181322g00006 280 MobiDBLite consensus disorder prediction 126 169 - -
Stsc181322g00006 280 MobiDBLite consensus disorder prediction 11 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00006 Stsc-Chr181322 31507 32880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00006 1 138 C2C2-Dof Transcription Factor Family AT2G37590 50.658 1.26e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181322g00006 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00006 - - adu:107461669 238.81