Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00005 ATGAGTAATGAGCAACGCCCGCTGCTGAACAAAACGCTGCGTTCTGGGCGAGATCCAGTGAATTCCATGGACGACGATAATAAGGCCGGAACAGCTGAGAGGCTGATCGATTTGGTCAACCAAATATCTTCCATCTCCGATTACAGGCCAACCGTCAAGAAGGAGTACTGCAACTTGGCCCGGAGGCTCAAGCTCCTCACACCATTGTTCGAAGAGATTAGGGACAGTAAGGACCCTCTCCCTCAACAAACTTCACAAGCTTTGCTTCACCTTAAACAAGCCATGGAATCCGCCATGGACCTCCTCCGATTCGGTACTGAAGGCAGCAAGATTTACATGGTCCTTGAGAGGGACCAAATTATTAATAAATTCCATGAGGTGACTGCTCAGTTGGAACAAGCATTGGCTGGAATTTCCTATGATAAACTTGACATTTCAGATGAAGTTACGGAACAGGTTGAGCTTGTTCTTGCACAATTTAGAAGAGCCAAAGGAAGGGTTGATCCAGCTGATGCCCAGTTGCATGAGGATCTCTTGTCCCTTTACAACAAGAGCAATGATGCAGCTACGGATCAAGCTGTTCTGCGGAGATTAGCCGAAAAATTGCAACTGACTGGAATAGCTGATCTCACACAAGAGTCACTAGCTTTGCACGAGATGGTGATCACGAGTGATGGGGATCCAGGGGCAAGTATTGAGAAGATGGCAATGTTGCTCAAGAGAATAAAGGATTTTGTACTAACAGAGAATCTAGACAAGGATGATAATGTAGTAGGAGGAAACAGCCTTTCTTCAAGTTGCTGCAAACAAGGGACAAATGAAAAGAATCATCAGCCCCCCGTAATCCCTGATGATTTTCGATGTCCAATTTCCCTCGAATTGATGCAGGATCCTGTTATCGTATCAACAGGACAGACTTATGAACGTTCCTGTATAGAGAAATGGTTGGAAGCAGGGCATGGTACATGTCCTAAAACACAGCAGACCCTATCTAGTAGTGTTCTTACACCAAACTATGTCTTAAGGAGCCTCATAGNNNNNNNNNNAAATGGCATAGAGCCACCAAAGAGGCCTAGCAGTTCTAGAACTGGTAAATCAGCATCTGCCTGCTCGCCGGCCGAGCAAAGCAAGATCGAAAATCTTCTTAGGAAGCTTACATCTGTCAATCCTGAAGACCAAAGATCGGCTGCAGGTGAGATTCGTCTTCTTGCAAAGCGCAATGCAGATAATCGTGTGGCCATTGCAGAAGCTGGTGCAATTCCTCTGCTTGTTGGTCTTCTCTGTACACCTGATTCTCGCATTCAAGAGCATGCTGTTACTGCACTTCTGAATCTCTCCATATGTGAAAACAACAAAGGAAGTATTGTATCTTCCGGGGCAGTACCGGGGATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCAGCCACACTTTTCAGCCTCTCAGTTATTGATGAAAACAAGGTTACAATTGGTTCTTCAGGGGCCATTCCACCATTAGTTACTCTTCTGAGTGAGGGCACCCAAAGGGGTAAGAAAGATGCTGCTACAGCACTCTTCAATTTGTGCATTTATCAAGGGAACAAGGGAAAGGCAGTAAGGGCTGGAGTTGTTCCCACTCTTATGCGACTGCTGACAGAACCCGGCGGCGGAATGGTGGACGAAGCATTAGCCATTTTGGCAATATTAGCTAGCCATCCGGACGGGAAGGCCGCTATTGGCGCGGCAGAGGCAGTGCCGGTATTGGTTGAGGTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCTGTATTGGTGCACCTTTGCAGTGGAGATCAACAATACATAGCTCAGGCACAGGAGTTAGGTGTGATGGGTCCACTGTTGGAATTGGCTCAAAATGGCACAGACAGAGGGAAAAGAAAAGCTGCACAATTGTTAGAGCGTATGAGCAGGTTCCTTGAGCAGCAGCAGCATGAGGATGAGGAACTTCAAACACAAACTGAATTATTGCCTTCTATTACTACAACTACTACTAACCTTGATGATAGCTGA 2058 0.4621 MSNEQRPLLNKTLRSGRDPVNSMDDDNKAGTAERLIDLVNQISSISDYRPTVKKEYCNLARRLKLLTPLFEEIRDSKDPLPQQTSQALLHLKQAMESAMDLLRFGTEGSKIYMVLERDQIINKFHEVTAQLEQALAGISYDKLDISDEVTEQVELVLAQFRRAKGRVDPADAQLHEDLLSLYNKSNDAATDQAVLRRLAEKLQLTGIADLTQESLALHEMVITSDGDPGASIEKMAMLLKRIKDFVLTENLDKDDNVVGGNSLSSSCCKQGTNEKNHQPPVIPDDFRCPISLELMQDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSSVLTPNYVLRSLIXXXXNGIEPPKRPSSSRTGKSASACSPAEQSKIENLLRKLTSVNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCTPDSRIQEHAVTALLNLSICENNKGSIVSSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPDGKAAIGAAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYIAQAQELGVMGPLLELAQNGTDRGKRKAAQLLERMSRFLEQQQHEDEELQTQTELLPSITTTTTNLDDS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00005 685 FunFam RING-type E3 ubiquitin transferase 554 671 - -
Stsc181322g00005 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Stsc181322g00005 685 SMART arm_5 489 529 IPR000225 GO:0005515
Stsc181322g00005 685 SMART arm_5 448 488 IPR000225 GO:0005515
Stsc181322g00005 685 SMART arm_5 407 447 IPR000225 GO:0005515
Stsc181322g00005 685 SMART arm_5 530 570 IPR000225 GO:0005515
Stsc181322g00005 685 SMART arm_5 571 611 IPR000225 GO:0005515
Stsc181322g00005 685 SMART arm_5 613 653 IPR000225 GO:0005515
Stsc181322g00005 685 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Stsc181322g00005 685 MobiDBLite consensus disorder prediction 1 29 - -
Stsc181322g00005 685 MobiDBLite consensus disorder prediction 350 370 - -
Stsc181322g00005 685 MobiDBLite consensus disorder prediction 356 370 - -
Stsc181322g00005 685 Pfam U-box domain 282 345 IPR003613 GO:0004842|GO:0016567
Stsc181322g00005 685 FunFam RING-type E3 ubiquitin transferase 282 351 - -
Stsc181322g00005 685 PANTHER U BOX DOMAIN-CONTAINING 53 653 - -
Stsc181322g00005 685 CDD RING-Ubox_PUB 283 335 IPR045210 -
Stsc181322g00005 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Stsc181322g00005 685 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Stsc181322g00005 685 Gene3D - 365 514 IPR011989 -
Stsc181322g00005 685 Gene3D - 515 672 IPR011989 -
Stsc181322g00005 685 FunFam RING-type E3 ubiquitin transferase 363 514 - -
Stsc181322g00005 685 CDD MLKL_NTD 29 161 - -
Stsc181322g00005 685 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Stsc181322g00005 685 Gene3D - 31 141 IPR036537 GO:0007166
Stsc181322g00005 685 SUPERFAMILY ARM repeat 378 660 IPR016024 -
Stsc181322g00005 685 Pfam Neurochondrin 542 662 IPR008709 -
Stsc181322g00005 685 Pfam Armadillo/beta-catenin-like repeat 407 446 IPR000225 GO:0005515
Stsc181322g00005 685 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515
Stsc181322g00005 685 SUPERFAMILY RING/U-box 272 346 - -
Stsc181322g00005 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 351 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00005 Stsc-Chr181322 25302 28941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00005 25 685 U-box Gene Family AT3G46510 69.080 0.0 907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00005 - - qsa:O6P43_000217 1017.3