Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181322g00001 ATGGTAAAGGAATTGGTTTCAACAGAGAAGTCCAGCTTTGTAAACAATCAAGACAAGAATAATCCTCAAGGTTGCATGTGGAGCTTACTTAATATTCTGGATTACCATCATTGGCATGTGAGAAAGGTCTTTGCTAATAAAAAGAAAAGACATGCCAGATATAAGAGAAACACCATTTTGCATAACCAAGGTGAAGAATATGGAAGCCCAGAAGCAGAAAAACTCCTGGTTGCGCAGGGTGGCGACGAAAAAGGCAAAAGGTACCAAAAACATGAGCAAAAAGAGCAAGACAGAGAAATTAGGCTTAAAGAAGGAAACTACAAAGGTGAATATGCACTTCATGTGGAGAAAGATGGCAAGAAAACACAAGAAAGGCCAAACAAGCCTGACAGAGACAGTGCCAATGTCTTTAAGAATCATGGTGATGTTTTGGGGGTAGTTAGAGTGGAGAAGGATTTACTCCTTAAATTTCTAAGAGAATTAGATTCTGAAGGGAAAAACCTTCATCAAGCTTCCCATCCTGAAGCAAGATTGACAAAATCAGGGTCATTTCCTTTAACCTCATCATCACAAATGAGAAGCATTACTCCTTCTAGTTCCTTGGAACACAAGAAAACCGAAGTTTGGGCCACTCCCAAAGGAGAAAGGTTGCTTGATAGTACTCAAACAATAAAACCAGTGCCTTTAGCGAGCGATCATGCTGCGGTTAGCGCCAGAAAACAAAAACCAGCTGATGGATTGAATCATAAAGGTTGGAACGAAATGGTCCTTCATCGTTTCAGAGTTATAAAGCAGAAGATAAAACATACTCTTTTGGAGTTAAGAAAAAATGGTCACCAGAGAGATTCATCTGAATATAACAGCATCACTAATGATGTTAAAGAGGCCTTGCAAAGCTTAGATGATGGCGTGGTTCGAGAGTACATACGAAGCAAAAGCTTAAAGGAGACTAAATCTTCTGATTCTGATTATGCTTCCAACAGACAGGAAGCACAACGACTTGTAAGGAGAACGACTTCTCTGAACGAATCGATGGATAAATATACTCGGTTGTTTGAGAAGAGCTTCAATGACTCAGATGTCAAGTGGCATAGTTCAAAATCCAAAAGCTTAAGACTTACAAGTGAGGATAAGATGATAAGTGACCATGCTTCTAGGTTTTCCAGAAGCAATCTTTCACTGCCTAATATTGAGGCTTTAAGCTTCATTGTACATGAGGCACTTGTTGATATGAAAGATAAAACTGGTACAGATGAGCCTGATAATGGTGTTGAAAGAAAACTGGTGGCACTTCCTTCAAAGAAAGATAAATCAATTGATCATGTTGAAGAGACTGAAATCACAGAAACAGCTAAGGATGCTAGTGGAGATATGAATCCAAGTCCCTTATCTAATGATCAGGTTGTGGACAAAATTGAAGAAGCAGTTACCAGTGAAAAAGTGGAAGACACATATGAACATGAGCCAGCTAGGGGAGATGGAATTTTTCCTCAGGAAAAAGAAGAAATAGGTATGGCTATTGTCGAAACTAACAGCGATGCAGATGCAACCCACCATACAGAAGGTAGAGAGTTGGATATTCAAGGATCTAGCATGGATGAATTGAAGACTGAGTCACCAAGTAAAGAAAGCATATATTCTTCGCCGAGTTCGTTACCAAATGCAAATGATAGTACAGAAAATGTCACAAACAAGAGTCCTGAGAATATTTTCCAAGACATAGACAATGATTCCAATTTCAGATACGTGAAGGCCATTCTCCAATTTTCAGGTTTCATGGAGAATGATCAGATTCTAACTAGGCACACTATAGACCAGCGATTAAAGCCTTCTTTGATCATGGAAATGGAATCCTCTATAGAGGATAATACCAAAGCCAATGATCAACAGCTTCTTTTCAACCTAGTTGATGAGGTGCTCCTTGATATATATGATAGGTCATCAAATCACTTCCCAAGGCCCTTCGCCTTCAACTACCGGCTCCATCCTGTGCCAAAAGGACACTATCTTCTTAATGAAGTATGGTCCAGTGTTAAATCATACCTGAGCTTGAGGCCAGAGCTAGATCAGACTTTAGACGATGTTGTGAGATGTGACTTGGCAAGAAGAAGTAGCTGGATGAACCTCCAGCAAGAAGAGGAGCAAGTTGCAATTGAACTAGAGGACATGATTTTGGATGATTTATTAGATGAACTCGTCTTCTCATGA 2208 0.3963 MVKELVSTEKSSFVNNQDKNNPQGCMWSLLNILDYHHWHVRKVFANKKKRHARYKRNTILHNQGEEYGSPEAEKLLVAQGGDEKGKRYQKHEQKEQDREIRLKEGNYKGEYALHVEKDGKKTQERPNKPDRDSANVFKNHGDVLGVVRVEKDLLLKFLRELDSEGKNLHQASHPEARLTKSGSFPLTSSSQMRSITPSSSLEHKKTEVWATPKGERLLDSTQTIKPVPLASDHAAVSARKQKPADGLNHKGWNEMVLHRFRVIKQKIKHTLLELRKNGHQRDSSEYNSITNDVKEALQSLDDGVVREYIRSKSLKETKSSDSDYASNRQEAQRLVRRTTSLNESMDKYTRLFEKSFNDSDVKWHSSKSKSLRLTSEDKMISDHASRFSRSNLSLPNIEALSFIVHEALVDMKDKTGTDEPDNGVERKLVALPSKKDKSIDHVEETEITETAKDASGDMNPSPLSNDQVVDKIEEAVTSEKVEDTYEHEPARGDGIFPQEKEEIGMAIVETNSDADATHHTEGRELDIQGSSMDELKTESPSKESIYSSPSSLPNANDSTENVTNKSPENIFQDIDNDSNFRYVKAILQFSGFMENDQILTRHTIDQRLKPSLIMEMESSIEDNTKANDQQLLFNLVDEVLLDIYDRSSNHFPRPFAFNYRLHPVPKGHYLLNEVWSSVKSYLSLRPELDQTLDDVVRCDLARRSSWMNLQQEEEQVAIELEDMILDDLLDELVFS 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181322g00001 735 MobiDBLite consensus disorder prediction 168 204 - -
Stsc181322g00001 735 Pfam Domain of unknown function (DUF4378) 580 731 IPR025486 -
Stsc181322g00001 735 PANTHER PROTEIN TRM32 7 735 IPR044257 -
Stsc181322g00001 735 MobiDBLite consensus disorder prediction 174 204 - -
Stsc181322g00001 735 MobiDBLite consensus disorder prediction 541 570 - -
Stsc181322g00001 735 MobiDBLite consensus disorder prediction 522 570 - -
Stsc181322g00001 735 MobiDBLite consensus disorder prediction 522 540 - -
Stsc181322g00001 735 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181322g00001 Stsc-Chr181322 1306 3980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181322g00001 142 725 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 25.854 2.14e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181322g00001 - - ahf:112772681 1122.46