Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181320g00018 ATGGCTTCCACTATTCACCGAAACGGCGTCGTTCAACGCGTAACCGCCAAGTTAGATCGCCAAGGCGCCAACAACAATAACATCGTCAGAACGAAGTCTCGCCACTCTCATCCGCCGGGATCCGCCGCCCTCCGCCGCAACTCGTCCTCTCACGGTGGCGACGCAGTTCCTGGAAGAGTTCGAGTGGCTGTAAGATTAAGACCTCGAAATGCAGAAGAAATGATGGCAGATGCTGATTTTGCAGATTGTGTAGAATTACAACCAGAGCTTAAAAGATTGAAGCTTCGACGTAACAATTGGGATTCAGACACTTATGAATTTGATGAAGTGCTCACTGAATTTGCTTCACAGAAGCGTGTTTATGAAGTTGTAGCTAAGCCAGTTGTGGAGAGTGTTCTTGATGGCTATAATGGAACTGTAATGGCTTATGGTCAAACTGGTACTGGGAAAACTTTTACTCTTGGACAATTGGGGGAGGAAGACACTTCTGGTCGGGGTATCATGGTTCGTGCCATGGAGGATATTTTATTGGATCTATCCCCAGAAACTGATTCTGTCACAGTCTCATATCTCCAGCTTTACATGGAGACTGTCCAGGACTTACTTAATCCAGCCAATGATAATTGTTCCATAGTGGAAGATCCAAGAACTGGTGATGTGTCTTTGCCCGGGGCAACTCATGTAGACATAAGGGACCAGCAGAGTTTTTTGGAGTTGCTTAGACTAGGGGAAGCTCATCGAGTTGCTGCTAACACCAGGATGAATACTGAATCTTCTCGTAGTCATGCTATTCTGACGGTACATGTCAGGAGGTCTGTTGTGGAAAGTGCAAATAATGTTTTGACTGAAAATTTTGATGCCTCTCACTTGACTAAACCTTCAAAACCACTTGCTCGAAAGAGCAAGCTTGTTGTTGTTGATTTGGCAGGATCAGAGCGTATCCATAAGTCAGGAAGTGAAGGACACATGCTTGAGGAAGCAAAATCTATCAATCTTTCTCTTAGCGCATTGGGGAAATGTATTAATGCTCTAGCAGAAAACAGTGCTCATGTGCCATTTCGTGATTCAAAGCTTACTAGGCTGCTTAGGGATTCCTTCGGAGGAACAGCTAGGACCTCACTGATTGTGACTATTGGTCCATCTCCACGACATAGAGGAGAGACATCTAGTACAATTTTGTTTGGCCAAAGGGCTATGAAGGTTGAAAACATGCTGAAGATTAAGGAGGAGTTTGATTATAAAAGTTTGTCTCGGAAACTTGAGGTACAGTTAGATAAGCTTATTGCAGAAAATGAAAGGCAGCAAAAAGCTTTTGAAGATGAAGTTGAAAGAATAAATTTGGAGGCACAATGTCGTATTGCTGAAGTTGAGAAGAACTTTGCCGATGCATTGGAGAGAGAAAGATTGAAATGCCAGATGGAGTACATGGAAACAGTTAAGCAGCTGGAGCAGAAGTTGGTGACAAGTCAGGAAAGACATGGTTGTAATGGTTTTGTCAAAGGCCGTGGAGAGGGGGCTACAACATCTTCTGCAGATGAAGTTGGTGAGGTCAAAAGGCTGTTTGAAATCGAAAAAAGTAAGAGAAAGGCAACTGAAGATGAGCTAGAAAGTCTAAAAATCCAACTGGGTAAATATGCACAAGTAGAGGCAGGAGGTGATGCTGACATGATAAAGCTTCGCAAAATCCTGGAGGATGATGCTACTCAGAAGAAGAGACTTGAAGAAGAAATAATAATATTAAGAAGCCAACTATTGCAATTGAACTTTGAAGCTGACCAGATGAGAAGCTGCTTAGAAAGTGGAAGTTCTGGAAATGCATTTCCTGCCGTGGATACCTCCTCGTCTCAAAGTAGACATTCCCAACTCAGGGACACCAGGAATGATCAGAAGGCATCTGTTGCTACTCTCTTTGAGCAAGTTGGATTGCATAAGATTTTATCATTGCTTGAGTCAGATGATGCCAATGTACGAGTACATGCTGTAAAAGTTGTGGCAAACCTAGCTGCTGAAGAGGCAAATCAAAAAAAGGCCAATCAAGAACTTATAATGGCTGAAGGAGGAGTTACTCTATTATCAATGGCTGCATCCGATGCCGAAGAACCACAAACTCTTCGAATGGTTGCTGGGGCCATTGCTAACCTATGTGGGAATGATAAAATACTGATGAAGCTGAGATCTCAAGGAGGTATAAAGGCTTTACTGGGAATAGTAAGATGTGGACACCCTGATGTTCTTTCGCAAATTGCTCGAGGAATTGCCAACTTCGCTAAATGCGAGTCTCGAGCTTCTAGTCAAGGGATAAAAAGTGGCAGATCCTTTTTAATAGATGATGGTGCACTTCCATGGATAGTTCAAAATGCTAATAATGAATCCGCACCAATTAGACGCCACATCGAGCTTGCACTTTGCCACTTGGCACAGCATGAAGTCAATGCAAAAGACATGATCAGTGGAGGAGCCCTTTGGGAGCTTGTCCAGATCTCAAGAGATTGTAACCGGGAAGACATAAGGAGCCTTGCTCGCCAGACTCTGAGCTCTATCCCGCAATTCAAATCTGAATTGCGGCGACTACGGATAGAATATTGA 2586 0.4354 MASTIHRNGVVQRVTAKLDRQGANNNNIVRTKSRHSHPPGSAALRRNSSSHGGDAVPGRVRVAVRLRPRNAEEMMADADFADCVELQPELKRLKLRRNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGQLGEEDTSGRGIMVRAMEDILLDLSPETDSVTVSYLQLYMETVQDLLNPANDNCSIVEDPRTGDVSLPGATHVDIRDQQSFLELLRLGEAHRVAANTRMNTESSRSHAILTVHVRRSVVESANNVLTENFDASHLTKPSKPLARKSKLVVVDLAGSERIHKSGSEGHMLEEAKSINLSLSALGKCINALAENSAHVPFRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETSSTILFGQRAMKVENMLKIKEEFDYKSLSRKLEVQLDKLIAENERQQKAFEDEVERINLEAQCRIAEVEKNFADALERERLKCQMEYMETVKQLEQKLVTSQERHGCNGFVKGRGEGATTSSADEVGEVKRLFEIEKSKRKATEDELESLKIQLGKYAQVEAGGDADMIKLRKILEDDATQKKRLEEEIIILRSQLLQLNFEADQMRSCLESGSSGNAFPAVDTSSSQSRHSQLRDTRNDQKASVATLFEQVGLHKILSLLESDDANVRVHAVKVVANLAAEEANQKKANQELIMAEGGVTLLSMAASDAEEPQTLRMVAGAIANLCGNDKILMKLRSQGGIKALLGIVRCGHPDVLSQIARGIANFAKCESRASSQGIKSGRSFLIDDGALPWIVQNANNESAPIRRHIELALCHLAQHEVNAKDMISGGALWELVQISRDCNREDIRSLARQTLSSIPQFKSELRRLRIEY 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181320g00018 861 Gene3D - 764 849 IPR011989 -
Stsc181320g00018 861 ProSitePatterns Kinesin motor domain signature. 301 312 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc181320g00018 861 PANTHER CENTROMERE PROTEIN E 59 672 IPR027640 GO:0003777|GO:0007018
Stsc181320g00018 861 Coils Coil 417 466 - -
Stsc181320g00018 861 PRINTS Kinesin heavy chain signature 135 156 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181320g00018 861 PRINTS Kinesin heavy chain signature 351 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181320g00018 861 PRINTS Kinesin heavy chain signature 252 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181320g00018 861 Gene3D - 637 763 IPR011989 -
Stsc181320g00018 861 Pfam Kinesin motor domain 65 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181320g00018 861 MobiDBLite consensus disorder prediction 18 34 - -
Stsc181320g00018 861 MobiDBLite consensus disorder prediction 17 57 - -
Stsc181320g00018 861 ProSiteProfiles Kinesin motor domain profile. 59 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181320g00018 861 MobiDBLite consensus disorder prediction 600 627 - -
Stsc181320g00018 861 Coils Coil 521 548 - -
Stsc181320g00018 861 Coils Coil 556 590 - -
Stsc181320g00018 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 436 IPR027417 -
Stsc181320g00018 861 SMART kinesin_4 57 409 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181320g00018 861 MobiDBLite consensus disorder prediction 600 620 - -
Stsc181320g00018 861 Coils Coil 472 492 - -
Stsc181320g00018 861 CDD KISc 59 399 - -
Stsc181320g00018 861 SUPERFAMILY ARM repeat 630 847 IPR016024 -
Stsc181320g00018 861 Gene3D Kinesin motor domain 54 431 IPR036961 -
Stsc181320g00018 861 FunFam Kinesin-like protein 51 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181320g00018 Stsc-Chr181320 122808 130932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181320g00018 58 448 Calmodulin-binding Proteins AT5G65930 34.314 4.58e-46 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181320g00018 - K10396 gmx:100789455 1278.85