Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181320g00016 ATGTCGGTGACTCTGCACACAAATCTTGGAGACATCAAGTGCGAAATCTTCTGTGACGAGGTTCCTAAAACTTCTGAGAACTTTTTAGCGTTGTGTGGGAGTGGTTATTATGATGGGACTATATTTCACCGCAACATCAAAGGTTTCATGATTCAAGGTGGAGACCCAACCGGCACCGGCAAAGGGGGTACCAGCATATGGGGCAAGAAATTCAATGACGAGATTAGGGAATCTCTTAAGCACAATGCAAGAGGAATATTGTCAATGGCTAACAGTGGTCCAAACACTAATGGAAGCCAGTTCTTCCTAACTTATGCAAAGCAGCCACATTTGAATGGACTTTATACAGTATTTGGCAGAGTTATCCATGGATTTGAAGTTCTTGATCTTATGGAGAAGACTCAAACAGGAGCAGGGGACCGTCCACTTGCCGAGATTAGGCTCAATCGAGTCACGATACATGCTAATCCTCTTGCTGGTTAA 483 0.4389 MSVTLHTNLGDIKCEIFCDEVPKTSENFLALCGSGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFLTYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181320g00016 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Stsc181320g00016 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Stsc181320g00016 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Stsc181320g00016 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Stsc181320g00016 160 Gene3D - 1 160 IPR029000 -
Stsc181320g00016 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Stsc181320g00016 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Stsc181320g00016 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 153 IPR044666 -
Stsc181320g00016 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Stsc181320g00016 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Stsc181320g00016 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Stsc181320g00016 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Stsc181320g00016 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Stsc181320g00016 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181320g00016 Stsc-Chr181320 103623 106023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181320g00016 3 157 U-box Gene Family AT5G67530 53.548 5.66e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181320g00016 K12734 - gmx:100306466 324.709