Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181320g00012 ATGGAATTGTTCGATCTCATCACACTCGCTTCCATTGCTTGCTCCCTCCTCATCTTCGTCATCACTTTCCTTTTCTTGTTGCAGGGGTTGCATCGGAGTATGTTGGAGAATTTGCAACCATTGCTTTCTCTATTAGGAAGGAGACCATGCCTACCTTGTTCATCAGTTGATTCAGATAATCATGAAAGCAATTCACATCAAATCACTCCTTCTTCTGTTCCTTTTGATATCTCTCATGCTCCGCAGATAAAATATGATGTCTTCATCAGTTTTAGAGGTTCAGACACCCGTCACGGTTTCGTCAGTCATTTGCATAAGGCATTGGAAACTCAAAAAGGAGTTGAAACATACATCGATTACAAACTTAGAGAAGGCGATGAATTGTCGTCGGCATTTTATTCGGCAATTGAGCAATCACAAATTGCACTGGTCATTTTGTCGAAAGATTATGCCTCTTCTAAATGGTGTTTGGATGAGCTCGCCAAGATAATTGAATGCATGAAGAAATATGGGCAGATTGTGATACCTATATTCTACAAGGTAGATCCATCAGATGTACGACATCAAAGAGGGTGCTATGAAAATGCACTCACTAAATATGAAGAAAGGTTCAAGGGCAACATAATGAATGTGGAGAAATGGAGATCTGCTTTGAAGGATGTTGCTAATTTATCAGGATTCCATTCAACACATTTTGGGACCGATGCAGAACTTATGGAAAAAGTAGTTCAACGCGTGTTAAATCGGTTGAATCATATGCACCAATTCGATTTACACGGTCTTGTTGGAATCAGTAAGCCAATTGCTGATCTTCAATCTCTAATATTTTGTAATGGAACAAAAGAAATTCATGTTGTTGGAATTTGGGGCATGGGCGGCATAGGTAAGACAACTATTGCTGGTGCATTATTTCACACTCTCTGTTCAGAATATGAAAATTGTTATTTTTTAGCAAATGTCAGAGAACAAATAGAAAAATATGGAATGCTTCAATTGCGAAATAATCTTCTTTGCATATTACTTGAGGATAAAGATCTCGACGCTGGTGTTCCGAATGTAGCATTAACTCATGTTTTGAGTAGACTCCGTCGCAAAAAGATCCTTGTTGTTCTTGATGATGTTATTAATCCTGATCAAGTCAGTCAATTAGTTGGGGGTCGTGGTCAACATGGTTGGTTGGGTCCTGGTAGTAGAATCATTGTCACCACTAGAGATAAGCATGTGCTTCGCAAAGAAGCTGATGATATATATGAAGTGAAGGCTTTAACATTTTACGAATCTCTGCAACTTTTAACTTTACATGCCTTTGATGGAAATGACATCCCAGAGGGTTACAATTATCTTATGGTGGAAGTGGTTCATTATGCTGAAGGCGTTCCATTAGCTTTAAAAGTTTTGGGTTCTTTTCTTTATGGCAAAAGTGTTGAAGAATGGAGGAGTCAGTTGGATAAGCTTCGAAAGATGCCATTTGAAGGAATTCAAAAGGTTTTGAGATTGAGCTATGATGGATTAGATCGCCATGAAAAAAAGATACTTCTATATATAGTCTGTTTCTTTACATGTCAAGATGTAAAATCGGATTGTTTTGGACATGATGTAAAGATGTTACTGGATGCATGTGGCTTCTCAACTACTATTGCTTTGAGAACCCTCCAAGATAGAAGTCTCATAACTATAAATTTCTTGGGAAGACTATATGTACATGACTTGATCCGACAAATGTGCCAAGAGATTGTTTGTGAAGAAAAAAGTGAAAAACCAGGGGAAAGGCATCATCTGTGGGATCCTAATGACATTTATCATGTATTGAAGTATGACAAGGGAACTGATTCTATTAAAAGCATAAGCTTGGATATATCAGAGATAAATGATCTGAACTTGACTCCTTATGCCTTTGCTAGTATGCTCAATCTAAAGTTTCTGAGCATTTCCGGATTTATTACAGGCTTCGGCCGATTGTATAATCCGGTCTCTCGCTTAGAATTTGATAACCCAGTGCATGCCCTTCAAGATCATATAATTCTTCTCCCAAATAATTTAAGGCTTTTGCATTGGGACTGTTGCCCTTTCAGGTCTTTGCCACCAAAACTGGAGAATCTTGTTGAACTTCATATGCGTTATAGTAGCCTTGAAAAACTTTGGGACAGTACACAGAACCTACCAAATCTGAGAAAGGTTTACCTTTGTCATTCCAAACAATTGAAGGAAGTTCCAGACTTGTCCAAAGCCGTAAGTCTTGAAGAATTAAATCTTGAGTCATGTGAGAATTTGGTCTCAGTTCATCCATCAATTTTCTCTCTCCCAAAGCTTGTTAAACTGAACTTGAGCTATTATAAAAGGTTCAAGAGACTTCCAGACTTGTCCAAAGCCTTGTCACTTGAAGAATTAAATCTTAACTCATGTGAGAACTTGGTCTCAGTTCACCCATCAGTTTTCTCCCTCCCAAAGCTTGTTAAACTGGACATGAGAAATTGTAAAATGCTCGAGAGACTTCCAGGAGTATTGGATGAAGAAGCATCTGCATCTCCATCTGCGTCGTCCTCGTTGTCCTCCAATCTTCAATACCTGGATCTGTCAGAATGTGTGAATCTGAAGCATCTTCCAGACACCTTTTATAAGCTCACATCTCTTCAACAGCTTCACCTTTTTGGGTGCAAAGAGTTGGACACATCAAACCTACACATCTTATTTGATGGTTTATCTTCTTTGACATGGCTAGAAATGGGTGGGTGTCATAAGTTGTATGAAGTTCCAGAGAACATAACCAACTTATCATTGTTAGAGTGGTTAGGACTTGATGAAACTAACGTGAAGAGCGTGCCAGAAAGCATCAAGCATCTTCCACACCTGAAACACCTCAACTTAAGGAACTGCAAAAAACTCGAATCACTACCTCACCTGATGGATAATTGCATATTGTCGGAGAGAGTGTTCACTCCAACGCCTAAGCTACTCCAGCAACACCTTGCACATTTTCAAAGTTTTCTTCAAGAAAGTGACCGTTATTGTGATCCAATATATTTTCTTTTTTATGGTAATGGTGCACCCTTTACCTTGATCAATTGTCCAAAGTTGGAGAGAGATGCCATTGATGCTATTCGGAAATATTCAGAGTGTTGCCGTAAGGGAAGGACAGAAATGAGTAAAAGTAAGAGAACACCACCCTGGTAA 3171 0.3879 MELFDLITLASIACSLLIFVITFLFLLQGLHRSMLENLQPLLSLLGRRPCLPCSSVDSDNHESNSHQITPSSVPFDISHAPQIKYDVFISFRGSDTRHGFVSHLHKALETQKGVETYIDYKLREGDELSSAFYSAIEQSQIALVILSKDYASSKWCLDELAKIIECMKKYGQIVIPIFYKVDPSDVRHQRGCYENALTKYEERFKGNIMNVEKWRSALKDVANLSGFHSTHFGTDAELMEKVVQRVLNRLNHMHQFDLHGLVGISKPIADLQSLIFCNGTKEIHVVGIWGMGGIGKTTIAGALFHTLCSEYENCYFLANVREQIEKYGMLQLRNNLLCILLEDKDLDAGVPNVALTHVLSRLRRKKILVVLDDVINPDQVSQLVGGRGQHGWLGPGSRIIVTTRDKHVLRKEADDIYEVKALTFYESLQLLTLHAFDGNDIPEGYNYLMVEVVHYAEGVPLALKVLGSFLYGKSVEEWRSQLDKLRKMPFEGIQKVLRLSYDGLDRHEKKILLYIVCFFTCQDVKSDCFGHDVKMLLDACGFSTTIALRTLQDRSLITINFLGRLYVHDLIRQMCQEIVCEEKSEKPGERHHLWDPNDIYHVLKYDKGTDSIKSISLDISEINDLNLTPYAFASMLNLKFLSISGFITGFGRLYNPVSRLEFDNPVHALQDHIILLPNNLRLLHWDCCPFRSLPPKLENLVELHMRYSSLEKLWDSTQNLPNLRKVYLCHSKQLKEVPDLSKAVSLEELNLESCENLVSVHPSIFSLPKLVKLNLSYYKRFKRLPDLSKALSLEELNLNSCENLVSVHPSVFSLPKLVKLDMRNCKMLERLPGVLDEEASASPSASSSLSSNLQYLDLSECVNLKHLPDTFYKLTSLQQLHLFGCKELDTSNLHILFDGLSSLTWLEMGGCHKLYEVPENITNLSLLEWLGLDETNVKSVPESIKHLPHLKHLNLRNCKKLESLPHLMDNCILSERVFTPTPKLLQQHLAHFQSFLQESDRYCDPIYFLFYGNGAPFTLINCPKLERDAIDAIRKYSECCRKGRTEMSKSKRTPPW 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181320g00012 1056 SMART till_3 84 224 IPR000157 GO:0007165
Stsc181320g00012 1056 Gene3D - 79 252 IPR035897 -
Stsc181320g00012 1056 Gene3D Ribonuclease Inhibitor 610 792 IPR032675 -
Stsc181320g00012 1056 Gene3D Ribonuclease Inhibitor 793 987 IPR032675 -
Stsc181320g00012 1056 PRINTS Disease resistance protein signature 285 300 - -
Stsc181320g00012 1056 PRINTS Disease resistance protein signature 456 470 - -
Stsc181320g00012 1056 PRINTS Disease resistance protein signature 361 375 - -
Stsc181320g00012 1056 PRINTS Disease resistance protein signature 945 961 - -
Stsc181320g00012 1056 Gene3D - 422 505 IPR042197 -
Stsc181320g00012 1056 Gene3D - 253 419 IPR027417 -
Stsc181320g00012 1056 FunFam Disease resistance protein (TIR-NBS-LRR class) 81 252 - -
Stsc181320g00012 1056 SUPERFAMILY Toll/Interleukin receptor TIR domain 81 227 IPR035897 -
Stsc181320g00012 1056 ProSiteProfiles TIR domain profile. 83 250 IPR000157 GO:0007165
Stsc181320g00012 1056 Pfam NB-ARC domain 281 504 IPR002182 GO:0043531
Stsc181320g00012 1056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 515 IPR027417 -
Stsc181320g00012 1056 SUPERFAMILY L domain-like 567 1007 - -
Stsc181320g00012 1056 Pfam Leucine Rich Repeat 699 717 IPR011713 -
Stsc181320g00012 1056 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 85 832 IPR044974 GO:0006952
Stsc181320g00012 1056 Pfam TIR domain 84 256 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181320g00012 Stsc-Chr181320 86914 93046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181320g00012 85 953 WRKY Transcription Factor Family AT4G12020 31.109 7.14e-96 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181320g00012 - - ahf:112730190 878.241