Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181320g00011 ATGACGACTTCTTCTTCTTCTTCCACTGCTCCTCAATTCAAATATGATGTATTCATCAGTTTTAGAGGTTCAGACACTCGCCGTGGCTTTTTCAGCCATTTGCTCACGGCATTAAGTCTGAAAAAGGTTCGTGCATTTGTAGATTACAAGCTTAAAGAAGGAAATGAAATATTGCCAGCACTTTACGCAGCAATTGAACAATCACAAATTGGGCCAATTATTTTCTCGGAAGATTATGCCTCTTCAAAATGGTGCTTAGAAGAGCTTGTCAAAATAACTGAATGCCAAAAAGAGAAGGGACAAATCATCTTACCTATTTTCTACAATGTTGAGCCTACAGAAGTTCGACATCAGAAGGGGTCCTATGCAGTTGCATTTCTTAATCATGAAAATGATTTCAAGGACGATGTCCATAAATGGCGAGCTGCACTTAAGGCTGTCGCAGATTTGTCAGGATTCCATTCCAAAAATTTTCGCAGAAGTGAGGCTGGGCTCATTGAAGAAGTTGTCAAACACATATTGAAAACTTTAGATGATATGCACCCAGCTTATGACTTTCAAGGCCTTGTTGGAATTAACAAACCAATAGTAGAACTTGAGTCAATAGTTTTTGCCAATGGCTCAAAAGATATTCGTGTTATAGGGATTTGGGGCATGGGTGGCATAGACGAAAAAGATTTAAACATTGGTGTTCCCAATGGAGTACCAAATCATGTTTTGAGAAAACTTCGTCAAAGAAAGATTCTTGTTGTTCTTGATGATGTCAGTACTTGTGATCAAATCACAAACTTAGTTGGAGGACATAGTTGGTTGGGTCCTGGTAGCAGAATCATTGTTACAACTAGAGATAAGCATGCAATTTCTAAAGAAGCAGATTTCATATACAGAGTAAAGGCATTGGAATCCAATGATGCTCGAAAGCTTCTAAATTTGCATGCCTTTAATGGAACTGATGAGCATTTCCTTGACTTTCGTTGGCATAATGTTGTGTCCAAAATGGTTGAATATGCTAAAGGCATCCCATTAGCATTGAAAGTTTTGGGTTCTTTTCTTTATGGAAAATGTGTTGAAGAATGGGAATGTCAATTGCAGAAGCTTCAGAAGATGCCCTTGCCAGATATTCATAATGTGTTGAGGTTATGTTACGAAGGATTGGATCACCAAGAGAAGAGCATATTTTTATACATTGCTTGTTTCTTCAAAGGGGTTGAAGGAAAGGATACAGTAGAAAATTTACTAGATGCTTGTGGTTACTCAACAGCTATTGCATTGAAAACTCTGCAAAATAAAGCTCTTATAACCATTGAGCATTGTGTATCCATGCATGATTTGATTCGAGAAATGGGCAGATGGATTGTGCGTCAAGAAAGCTTCAATAAGCTTGGAGAACAATGCCATTTATGGGATCCTCATGATATTTATCACGTGCTGAAGCATAGAGAGGGCACAAACCATATTGAAAGCATAACCTGGAACATGTCAAGTGTTAGTGCTGACATAAACCTAAGTCCTCATTTTTTTGCTAGGATGGACAATCTTAAACTTTTGAGGTTTTATTACAATAATAATAATAGTAGTAGTAACTATTACTATTATTATTATTATTGTTCGGGTAATAACACTTGCCAAGTTCATCTTCCACAAGGTCTTCAAATACTGCCACAGAAACTACTACTCTTTCATTGGGACAATTACCCCGCGAAATCGTTTCCAACAGCATTCAATGCAGAGTGTCTTGTTGAAATTCGCATGAAAGAAAGTCGTCTTGAAAAGCTCTGGGGTGGAGTACAGGATATACCAAATATGAAAAGGATTGTTCTTAATGGATCCAAACAATTGATGGAGCTTCCAGATTTATCTAAAGCCTTGAATATTCAAGAATTAGAACTCATGGGATGCATAAATTTGCTTTCACTTCACCCATCAATTTTTTCTCTTCCAAACCTTGTTACAGTGACCTTATGCAATTGTCTAAGGCTCAACAATATTCCAGAGTGGTCTGAAGTGAAAAAGGAAGTACTGAGTTCAGCATCATCATCATCATCATCATCATCATCATCATCATCGCATACTAGCCGCTCCAAGCTTCAATACTTGAACTTGGAGGGATGTGTGAGTCTGAAGAATCTACCAAACAGCTTTTCTACCCTCACATCTCTTAAAGTGCTTTACCTTGGAGGTTGCATAGAGTTAGACACATCAAATCTACACATCTTATTTGATGGTTTAACTTGTTTAACACATCTAGACTTGGATGGGTGTGATAGGTTGTATCAAGTCCCAAATAACATCAACAACTTATCATTGCTAGAGTCCTTATCACTCAGGGACACCAATGTGAAGAGCATTCCAGAAACTATCAAACACCTTCCATGCCTCAGAAATCTCTTGTTAACCAGTTGCAGGGGCCTCCAGTCACTGCCTCAGATTCCACCATCTCTCCAGTATTTACAAGTCAGTAATTGCAGATCGTTGGAGAGAGTGTTCACTCCAACACATGAACTACTCGAACAACACCTTGCATCCTACGAAAACGAGTATTATATTGGAGGCACGGTTTTTTCATTCAAGAATTGCCCAAACTTAAAGAAATATGCAATTGATGCTATTCATGAATATGTCAAGTGCTGCAATGAAGAGAAGAGATCAATGAGAGATTCTAGGAGAGTAGGGAATAAGAGAAAGCGTCATTGA 2694 0.3816 MTTSSSSSTAPQFKYDVFISFRGSDTRRGFFSHLLTALSLKKVRAFVDYKLKEGNEILPALYAAIEQSQIGPIIFSEDYASSKWCLEELVKITECQKEKGQIILPIFYNVEPTEVRHQKGSYAVAFLNHENDFKDDVHKWRAALKAVADLSGFHSKNFRRSEAGLIEEVVKHILKTLDDMHPAYDFQGLVGINKPIVELESIVFANGSKDIRVIGIWGMGGIDEKDLNIGVPNGVPNHVLRKLRQRKILVVLDDVSTCDQITNLVGGHSWLGPGSRIIVTTRDKHAISKEADFIYRVKALESNDARKLLNLHAFNGTDEHFLDFRWHNVVSKMVEYAKGIPLALKVLGSFLYGKCVEEWECQLQKLQKMPLPDIHNVLRLCYEGLDHQEKSIFLYIACFFKGVEGKDTVENLLDACGYSTAIALKTLQNKALITIEHCVSMHDLIREMGRWIVRQESFNKLGEQCHLWDPHDIYHVLKHREGTNHIESITWNMSSVSADINLSPHFFARMDNLKLLRFYYNNNNSSSNYYYYYYYCSGNNTCQVHLPQGLQILPQKLLLFHWDNYPAKSFPTAFNAECLVEIRMKESRLEKLWGGVQDIPNMKRIVLNGSKQLMELPDLSKALNIQELELMGCINLLSLHPSIFSLPNLVTVTLCNCLRLNNIPEWSEVKKEVLSSASSSSSSSSSSSSHTSRSKLQYLNLEGCVSLKNLPNSFSTLTSLKVLYLGGCIELDTSNLHILFDGLTCLTHLDLDGCDRLYQVPNNINNLSLLESLSLRDTNVKSIPETIKHLPCLRNLLLTSCRGLQSLPQIPPSLQYLQVSNCRSLERVFTPTHELLEQHLASYENEYYIGGTVFSFKNCPNLKKYAIDAIHEYVKCCNEEKRSMRDSRRVGNKRKRH 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181320g00011 897 Gene3D - 231 294 IPR027417 -
Stsc181320g00011 897 SMART till_3 14 150 IPR000157 GO:0007165
Stsc181320g00011 897 Pfam TIR domain 14 192 IPR000157 GO:0007165
Stsc181320g00011 897 Pfam NB-ARC domain 238 371 IPR002182 GO:0043531
Stsc181320g00011 897 PRINTS Disease resistance protein signature 337 351 - -
Stsc181320g00011 897 PRINTS Disease resistance protein signature 715 731 - -
Stsc181320g00011 897 PRINTS Disease resistance protein signature 213 228 - -
Stsc181320g00011 897 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 240 714 IPR044974 GO:0006952
Stsc181320g00011 897 Pfam Leucine Rich Repeat 578 597 IPR011713 -
Stsc181320g00011 897 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 153 IPR035897 -
Stsc181320g00011 897 Gene3D - 9 182 IPR035897 -
Stsc181320g00011 897 SUPERFAMILY L domain-like 441 866 - -
Stsc181320g00011 897 Gene3D Ribonuclease Inhibitor 484 676 IPR032675 -
Stsc181320g00011 897 Gene3D Ribonuclease Inhibitor 677 884 IPR032675 -
Stsc181320g00011 897 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 179 - -
Stsc181320g00011 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 396 IPR027417 -
Stsc181320g00011 897 Gene3D - 299 386 IPR042197 -
Stsc181320g00011 897 ProSiteProfiles TIR domain profile. 13 177 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181320g00011 Stsc-Chr181320 82141 86382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181320g00011 11 853 WRKY Transcription Factor Family AT4G12020 29.450 1.58e-86 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181320g00011 - - aip:107627842 1369.37