Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181320g00002 ATGGATTACTACCTTACACTAATACTACTCATCTTCTCCTTTCTTGTCTCAACACTTCTTTTCTCCTTCATCATCCAAAAACAACACTCAAAGCTTCTTCCACCAGGTCCTAAACCATACCCCATCATTGGAAACCTCTTGCATCTTCTTCTTACCAACAAAAACAACTCTAATTCTCTTGAATCATTCATCAACCTCTCCAAAACTTATGGACCTATAATTACCCTAAAATTAGGCACTCTTACCTCCATAGTGATATCTTCTCCACAAATAGCCAAAGAAGCACTCCAAAAAAATGATGTGGCCTTATCCAATAGAACAATCCCATATACTATTTTCTCAACAATTGAGGAACATTGTTGCAAGAAATCAATTATCTTCTTACCTTCATCTACCAAATGGAGATCCTTCAGAAGGGCTTGTGCAACAAGAATATTCTCGCCGCAACGGCTCGACTCCACGCAAATCCTAAGGAAGAGAAAGGTTCAAGACTTGTTAGATTTTTTGCATGAATGTTGCAAAAAAGGTGAAGCTTTAGATATTGGTGAGGCTATTTTTAAAACGGTACTAAATTCAATATCAAACACTTTTATCTCCATGGATTTGGTTGATTACTATGATAATAATGAGAAGTTTAAAGTGTTTAAGGATATAGTGTTTGGCTTCACTGAGGAATCTTCAAGGCCTTGTCTGGGAGATTTTTTTCCTTTGTTAGGATTTTTGGATTCACATGGTGCACGTGCAAGGACAAAAGATCGCTATGCAAAGTTATATGCAGTTATTGATGGTGCCATAGAAGAAAGAATTCGTTTGAGGGATTCAAAACCTGGTTACTCTCAAGAGTTCAATGATGCATTGGATTCCCTTTTGGATTTTGTCAATGGAGAGAGTTCTGAATTCAATCGCCATGATATTGTGCCTTTATTGATGGATTTATTTGTTGCTTCAATAGACACAACATCAAGCACATTAGAATGGGCAATGGCAGAGTTGATGCATAGTCCAACAAAATTGCATAAAGTTAAAGAAGAGCTTCAACAATCACTCGGCAAAAATGGAGAAGTTGAAGAGTCTCGTATCTCAAAGCTCCCATACCTGAATGCAATTGTGAAAGAAACTTTGAGGCTTCATCCGCCAGCACCATTGCTGGTACCCCGCAAAGCAAGTGATGATGTAGAGTTAGGTGGCTTCACTGTGCCCAAAAATGCACAAATCCTTTTTAATGTGTGGTCTATTGGAAGAGACTCACACATTTGGGCTAACCCTAATTCATTTGAACCTGAGAGGTTCTTGGATAGTGAAATTGATTTTAAGGGTAAACATTTTGAGTTGATTCCATTTGGTTCAGGAAGAAGAATTTGCCCTGGATTACCATTGGCATCAAGAACTTTGAGTTTTATGCTGGCATCACTTTTGTATCATTTCAATTGGAAGATTGCTAATGAGATGAATCCAGAAGATATAGAAATGAGTTTTAGTTATGGCCTTACCTTACATAAGGCCCAGCCTTTATTTCTTGTACCTATGAAAGTTTAG 1536 0.3763 MDYYLTLILLIFSFLVSTLLFSFIIQKQHSKLLPPGPKPYPIIGNLLHLLLTNKNNSNSLESFINLSKTYGPIITLKLGTLTSIVISSPQIAKEALQKNDVALSNRTIPYTIFSTIEEHCCKKSIIFLPSSTKWRSFRRACATRIFSPQRLDSTQILRKRKVQDLLDFLHECCKKGEALDIGEAIFKTVLNSISNTFISMDLVDYYDNNEKFKVFKDIVFGFTEESSRPCLGDFFPLLGFLDSHGARARTKDRYAKLYAVIDGAIEERIRLRDSKPGYSQEFNDALDSLLDFVNGESSEFNRHDIVPLLMDLFVASIDTTSSTLEWAMAELMHSPTKLHKVKEELQQSLGKNGEVEESRISKLPYLNAIVKETLRLHPPAPLLVPRKASDDVELGGFTVPKNAQILFNVWSIGRDSHIWANPNSFEPERFLDSEIDFKGKHFELIPFGSGRRICPGLPLASRTLSFMLASLLYHFNWKIANEMNPEDIEMSFSYGLTLHKAQPLFLVPMKV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181320g00002 511 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS P450 superfamily signature 315 332 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 FunFam Cytochrome P450 76C4 25 507 - -
Stsc181320g00002 511 Gene3D Cytochrome P450 22 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 510 - -
Stsc181320g00002 511 Pfam Cytochrome P450 34 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Stsc181320g00002 511 CDD CYP76-like 67 508 - -
Stsc181320g00002 511 PRINTS E-class P450 group I signature 324 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 304 321 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181320g00002 511 SUPERFAMILY Cytochrome P450 34 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181320g00002 Stsc-Chr181320 10211 13374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181320g00002 8 510 Cytochrome P450 AT2G45550 46.275 3.20e-157 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181320g00002 - K20556 gmx:100809483 537.724