Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181319g00001 ATGTCATTACCCTCTTCACCGCATGATCATAGAGGACAATCATCTGAGAGAGGTGGACTATCTGGATATGGAGTGAACCCTAAACTGGAGTTAACTTGGAATAAAGTTCTCGAATTGCAAATGTTTGAAAATAAACCTCTATTACCATTTGAAGAATGGAATATTGACTTCTCAGAATTAACAGTCGGAACTCGTGTTGGGATTGGGTTTTTTGGTGAAGTTTTCCGTGGCATGTGGAATGGCACAAATGTCGCAATCAAGGTTTTTCTTGAGCAAGATTTAACTATTGAAAACATGGAAGATTTCTGCAATGAGATAAGCATTCTCAGCCGGCTGCGACATCCTAATGTTATTCTGTTTCTTGGTGCATGCACAAAGCCTCCACGCTTGTCGATGGTTACCGAATATATGGAAGTTGGATCTTTGTATTTCTTGCTTCATGCGAGTGACCAAAAGAAGAAGCTTAATTGGAAGAAAAGATTAAAGATGTTGCGTGGCATATGCCGGGGCTTGATGCACATTCATCGTATGAAGATTATTCACCGTGATGTGAAAAGTGCAAATTGCCTTGTGGATAAGCATTGGACAGTGAAAATATGTGATTTTGGACTCTCTAGAATAGTGACTGAGACTCCCATGACAGATTCTTCATTAGCAGGAACACCAGAGTGGATGGCTCCGGAACTCATTCGAAATGAACCATTCACTGAAAAATGTGACATATTTAGTCTTGGGGTTATAATGTGGGAGCTTTGTACCTTATGTAGGCCATGGGAAGGTGTACCTCCAGAAAGAGTGGTTTACGCTGTAGCTAATGAAGGTTCCAGATTGGAAATTCCTAAAGGCCTAATGGGTAGACTGATATCAGATTGTTGGGCAGAACCACATGAGCGACCAAGTTGCGAGGGGATTCTTTCTCGTTTGGTAGACATTGAGTACTCAATGTCTTGA 951 0.4122 MSLPSSPHDHRGQSSERGGLSGYGVNPKLELTWNKVLELQMFENKPLLPFEEWNIDFSELTVGTRVGIGFFGEVFRGMWNGTNVAIKVFLEQDLTIENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEVGSLYFLLHASDQKKKLNWKKRLKMLRGICRGLMHIHRMKIIHRDVKSANCLVDKHWTVKICDFGLSRIVTETPMTDSSLAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLCRPWEGVPPERVVYAVANEGSRLEIPKGLMGRLISDCWAEPHERPSCEGILSRLVDIEYSMS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181319g00001 316 ProSitePatterns Protein kinases ATP-binding region signature. 66 87 IPR017441 GO:0005524
Stsc181319g00001 316 Gene3D Transferase(Phosphotransferase) domain 1 139 316 - -
Stsc181319g00001 316 SUPERFAMILY Protein kinase-like (PK-like) 35 308 IPR011009 -
Stsc181319g00001 316 Gene3D Phosphorylase Kinase; domain 1 53 138 - -
Stsc181319g00001 316 FunFam Os07g0541700 protein 137 221 - -
Stsc181319g00001 316 Pfam Protein tyrosine and serine/threonine kinase 61 307 IPR001245 GO:0004672|GO:0006468
Stsc181319g00001 316 MobiDBLite consensus disorder prediction 1 21 - -
Stsc181319g00001 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Stsc181319g00001 316 ProSiteProfiles Protein kinase domain profile. 60 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181319g00001 316 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Stsc181319g00001 316 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Stsc181319g00001 316 PRINTS Tyrosine kinase catalytic domain signature 134 147 IPR001245 GO:0004672|GO:0006468
Stsc181319g00001 316 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Stsc181319g00001 316 PIRSF ILK 36 316 - -
Stsc181319g00001 316 SMART serkin_6 60 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181319g00001 316 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 308 - -
Stsc181319g00001 316 FunFam Serine/threonine-protein kinase isoform 1 51 138 - -
Stsc181319g00001 316 CDD STKc_MAP3K-like 66 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181319g00001 Stsc-Chr181319 6043 9179 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181319g00001 1 315 MAP Kinase Kinase Kinase AT2G31010 75.873 5.14e-179 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Stsc181319g00001 PK_Tyr_Ser-Thr 5.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181319g00001 - - pvu:PHAVU_011G129600g 564.688