Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181317g00018 ATGGCTGTTGCTGAGGATGCGGGTGCGAAATTCGGTGGTTCGAGTGAAGATTTGGAGAAAAGTGTAGTGTCATCTGACTCAAATGCTCCAAACGAAGAAGTGGAGAAACCGAAACCCCGAAATGGTTCTGTTGGAAACGGTGTAGAGGCCGATCAGAATCTCAACGGTGTTGATGGCGTTCCAACCATTGTCTCAGTCCCTAATGGCAATCATAATCCCCAAATTGGTGGTCAGATGCAAACTGGTTTGGAAACAAACGGTGGTGGGGGGTTTAGGGTGGGCCATCAGATGGGTAATGGAGTGAGGAATGGAGGGGAGGATGGCGGCGAGAGCTTCAAACGCGAAATGAGGGATTTGGCGGAGCTCTTGTCCAAGTTGAACCCTATGGCTGAGGAGTTTGTGCCCTCTTCACTTGCAAAGAATCATGGGTACTTGCCTGGTGGGTTCGGTTTCCCTAACAACTTGCTACTGCCTGCTAATTTCGGCAATGCTAATGGCCAACCTAATAGAAGGAGAAAGAATGGCTACAACAATCGGGGGAAGCAAAGAGCAAATCATAAAATAGAAATGGAGAGAAGGGAAGAGATGATTAGGAGGACTGTTTATGTCTCCGATATCGATCAACAGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTCGTTGATTGCCGAGTATGCGGGGATCCAAATTCTGTTCTTCGTTTTGCCTTCATTGAGTTCACGGATGAAGATGGTGCAAGAGCTGCTCTGAACTTGTCTGGCACCATGCTTGGTTATTACCCAGTGAGAGTGCTGCCATCTAAAACTGCCATTGCACCAGTTAATCCGTCATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATCGACAAAAAGGTTACTCAAGCTGACGTTAAACTCTTCTTTGAATCTCTTTGTGGAGAGGTTCAACGCTTGAGACTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTCGAGTTCACAATAGCTGAAAGTGCAATCGCTGCTCTGAACTGTAGTGGTGTGATTTTGGGTACGCTGCCGATAAGGGTAAGTCCATCGAAGACACCAGTTCGGTCTCGTGCACCTCGTGGTTCAATGCATTGA 1155 0.4701 MAVAEDAGAKFGGSSEDLEKSVVSSDSNAPNEEVEKPKPRNGSVGNGVEADQNLNGVDGVPTIVSVPNGNHNPQIGGQMQTGLETNGGGGFRVGHQMGNGVRNGGEDGGESFKREMRDLAELLSKLNPMAEEFVPSSLAKNHGYLPGGFGFPNNLLLPANFGNANGQPNRRRKNGYNNRGKQRANHKIEMERREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSVLRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPSYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALNCSGVILGTLPIRVSPSKTPVRSRAPRGSMH 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181317g00018 384 FunFam Polyadenylate-binding protein-interacting protein 10 290 368 - -
Stsc181317g00018 384 SUPERFAMILY RNA-binding domain, RBD 190 275 IPR035979 GO:0003676
Stsc181317g00018 384 SUPERFAMILY RNA-binding domain, RBD 283 379 IPR035979 GO:0003676
Stsc181317g00018 384 CDD RRM2_CID8_like 292 373 IPR034825 -
Stsc181317g00018 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 121 377 - -
Stsc181317g00018 384 MobiDBLite consensus disorder prediction 1 78 - -
Stsc181317g00018 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 372 IPR000504 GO:0003723
Stsc181317g00018 384 Gene3D - 162 276 IPR012677 -
Stsc181317g00018 384 Gene3D - 280 378 IPR012677 -
Stsc181317g00018 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 274 IPR000504 GO:0003723
Stsc181317g00018 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 361 IPR000504 GO:0003723
Stsc181317g00018 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 263 IPR000504 GO:0003723
Stsc181317g00018 384 SMART rrm1_1 297 368 IPR000504 GO:0003723
Stsc181317g00018 384 SMART rrm1_1 200 270 IPR000504 GO:0003723
Stsc181317g00018 384 CDD RRM1_CID8_like 197 276 IPR034823 -
Stsc181317g00018 384 MobiDBLite consensus disorder prediction 163 184 - -
Stsc181317g00018 384 FunFam Polyadenylate-binding protein-interacting protein 11 162 276 - -
Stsc181317g00018 384 Pfam Ataxin-2 C-terminal region 123 137 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181317g00018 Stsc-Chr181317 130473 135968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181317g00018 198 360 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 1.51e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181317g00018 - - pcin:129303146 553.518